Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02418 ATGGCTATAAAGGGTTTAGGTTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCACGAGTGATTGTGTATTTGCTCCTTACTTTTCCTACGACCAAGCTTCAACCCATTTTGCAGCAGTGCATAAGATTTATGGTGCTAGTAATGTCTCCAAGCTACTGTCACATCTTCCAATCCAGAATAGAAGTGATGCTGCCATCACCATATCTTATGAAGCCTTGGCTCGCATGCAGGATCCTATATACGGCTGTGTTGCTCATATCTATGCATTGCAGCATCAGGTTGCCAGCTTGCAAGAGGAGATAGATGCTCTTGGAAGTCTAATGGCAAATTCCACAGTTAGTGTTGTCAATTATGGCAGTGTCCAAGCACCAATGAACTCAAACAACGGAACACAATATAATATTTTGCAGCATGATGCTACAAGGACACAGTATTGTCAAAATAATCTGGCTAATTTTCTTTCACAAGAAGGAAGTGACACAGTCTACCAGAGTTTCGACTTACAGATGGATATAGAGCTTCCTAATGCGCACGTGGAAGAACCTTCATTTGGTGATTGTAACTCCAATAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTCTTCGTGAATCATCCATGGTTCAAGCATAATGCACACATAAAGAACTAG 666 0.4144 MAIKGLGSSCGACKFLRRKCTSDCVFAPYFSYDQASTHFAAVHKIYGASNVSKLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDALGSLMANSTVSVVNYGSVQAPMNSNNGTQYNILQHDATRTQYCQNNLANFLSQEGSDTVYQSFDLQMDIELPNAHVEEPSFGDCNSNNPLEQFLSGIDQEVFVNHPWFKHNAHIKN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02418 221 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Pumo9g02418 221 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
Pumo9g02418 221 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02418 Pumo-Chr9 58344146 58345330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02418 7 214 AS2 family AT5G06080 47.596 2.27e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo9g02418 LOB 7.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02418 K13945 - gmx:100787638 355.525