Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02399 ATGGCTCCTTCTTCAGATCTTAACCATCTTTCACATCCTTGCATCTATGGGGGTTATACTTCTTCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCACCATCATGAGCCATCAGAGGAAAGCATAGTTTGGGGTGCTCCATCTAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTAGGCCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAACGCCCATCAAGGATATAATTGGGGAGAAGACACTGGTGATGATTACTCAAAGGCACCTCACGATACCCTTAACTCATCTGCACACCCTCCATATGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTCCACCCAAATTGTTTTCGTTGTCACTCTTGTGGTTACCCCATTACAGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGATACCGGTGATTGCCAGCCCCTTTACCATTCTATCAGAGATTACTACGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCATCACTTACCAGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTGTATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGGTTGGCTACGCCTTAATGGTAGTTATCGCAATCTTAATCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGGTGCTGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCAAAGAAGGGTTTGCAGTCTCAAGCTGAGAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTGGACTGGTTTTTTCCCAGTGTAA 1530 0.4255 MAPSSDLNHLSHPCIYGGYTSSRSERKSGFMKWLSKLFRGGSNRGRGGRHHHEPSEESIVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYNWGEDTGDDYSKAPHDTLNSSAHPPYAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLNGSYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTGAASSSSSSSSSSKKGLQSQAENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHWTGFFPV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02399 509 MobiDBLite consensus disorder prediction 69 85 - -
Pumo9g02399 509 CDD LIM_DA1 142 194 - -
Pumo9g02399 509 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 167 - -
Pumo9g02399 509 FunFam Protein DA1-related 2 130 195 - -
Pumo9g02399 509 MobiDBLite consensus disorder prediction 431 454 - -
Pumo9g02399 509 SMART lim_4 141 193 IPR001781 -
Pumo9g02399 509 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Pumo9g02399 509 Gene3D Cysteine Rich Protein 137 201 - -
Pumo9g02399 509 PANTHER PROTEIN DA1-RELATED 2 33 508 IPR045218 -
Pumo9g02399 509 MobiDBLite consensus disorder prediction 41 110 - -
Pumo9g02399 509 Pfam LIM domain 142 195 IPR001781 -
Pumo9g02399 509 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Pumo9g02399 509 Pfam Protein DA1 291 503 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02399 Pumo-Chr9 58112258 58116811 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo9g02399 DA1-like 2.7e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02399 - - gmx:100784976 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02399 9 58112258 58116811 Pumo9g02399 9 58112258 58116811 ECH