Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02365 ATGTTGGTCACTGAAGACAAGTCTCATGTTGTTGTTGCTATAGACAATAATAATGGCTGTTGTCACCGGAGCTCTGCCGGCGGCGAGGGGTGCTCCGACGGCGGTGACCGGTCAGATGAGGAGCAAAGGTCCTCCCATGATTCTGGCACTGAGATTGTGGGAGTGTGTGAGAAGGAGAGAGGATCCTCTGCATCAGAGTGTTCAGTGGAGGTGGATCTGGAGGAGGGTGCAGTTCCTGAGGTTAAGGTGCATTTGGCCAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACAAACCATGAATCTGGGACTCCCATTGAGCTGGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGAAACAAAACTTGTGAAATCTGTGGATCGATTGCACGCAACGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAGTGGAATGAGGCAAATGATGCTTCCACGGCACCACCATCTGGACCAGCACCACCCGCAGAAACTCGAAATTTCTGGCAGGGTCACCGGTTTTTGAATTTCCTGCTAGCCTGTATGGTCTTTGCCTTTGTCATATCCTGGCTTTTTCACTTTAATGTGCCCTCTTGA 648 0.4954 MLVTEDKSHVVVAIDNNNGCCHRSSAGGEGCSDGGDRSDEEQRSSHDSGTEIVGVCEKERGSSASECSVEVDLEEGAVPEVKVHLANVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWNEANDASTAPPSGPAPPAETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02365 215 MobiDBLite consensus disorder prediction 33 47 - -
Pumo9g02365 215 PANTHER ZINC FINGER, RING-CH-TYPE 19 214 - -
Pumo9g02365 215 SUPERFAMILY RING/U-box 89 146 - -
Pumo9g02365 215 ProSiteProfiles Zinc finger RING-CH-type profile. 84 150 IPR011016 GO:0008270
Pumo9g02365 215 MobiDBLite consensus disorder prediction 25 52 - -
Pumo9g02365 215 SMART ringv_2 91 144 IPR011016 GO:0008270
Pumo9g02365 215 Pfam RING-variant domain 92 143 IPR011016 GO:0008270
Pumo9g02365 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02365 Pumo-Chr9 57055438 57061097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02365 32 215 C3H Transcription Factor Family AT5G05830 65.054 7.61e-77 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02365 - - gmx:100818979 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01278 5 30644516 30647888 Pumo9g02365 9 57055438 57061097 ECH
Pumo9g02365 9 57055438 57061097 Pumo9g02365 9 57055438 57061097 ECH