Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02364 ATGACCGAAGAAGACCGCTCCGCCGAGGAAACCGTCCGCAATGGCATCGCCGCGACGGAGCTCGGCGGCGAAGAGATGGACCTGGCGGAGGTGACGGCGGTCGGCGATGGTTCCGTCGCCGGAAGAGTGAAGGGACCGTGGTCGCCGGAGGAGGACGCGCTGCTGAGCCGATTGGTGGCGCAGTTCGGGGCGCGGAACTGGAGCATGATCGCGCGGGGAGTGCCAGGACGCTCCGGCAAGTCTTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGAGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCAGGTAGAACAGATAATTCTATCAAGAATCACTGGAATTCTACCCTGAAGCGCAGGTGTATGGAACTGGGAAGATATGTCCCAGCACATGCTGATGTGGTCGAAGATGGTAGCTTTGAAAAAACAAAAGCATCCTCTGAAGAAACCATGTCAATCGGGGATATCAATTCATTGAATCCGGCAGAAGTCAGAAATGTCATGATGGATAATGAAAATAAACCTCCAACAAAAGATGATGCTAAAGTGGAGGAACATCCTACCCTTCATCGACCAGTAGCACGTATTAGTGCATTTAGTGTTTATAATCCTCCAGGCAGGCCAACAACTGGATCATGTTCAAAGATGTTCCCAAGACAGAGCCCTTTGATCCAATCCCCCAAACCAGACGTAGGATCCTGCAAGTTATTTGATAGTATTGATTGTGAGCCCATGGTTCCATCGCAATGTGGTCATGGCTGCTGCACAGCAGACTCGAGGGAAAGCCATTCAAATGGTTCACTTCTAGGTCCCGAGTTTGTTGACTATTTGGAGTCACCTTCTTTCTCTAGTCATGCATTGATTTCAATAGCTACAGACTTAAACAATATAGCTTGGATCAAGAGTGGCCTTGAGAATTGTAGAAATGGAGTAACTGATGAGAATGCTGCAAACTTGACAGCATCTCAAGGAGTTGCCACTGCTTCGCAAATCAACTTCTTACGACAAGATCTAAAGAATGGCTTCGGGCAATTTGAGGAGGGACCTGGCATGTTTTTGGGTGCAATGCAAGAGGTGTTATCAACAAAGATGGCTAGGCAACATTTTGCAATGCCTGCGGAAGTTTGA 1200 0.4925 MTEEDRSAEETVRNGIAATELGGEEMDLAEVTAVGDGSVAGRVKGPWSPEEDALLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDSIIVSAHAIHGNKWAAIARLLPGRTDNSIKNHWNSTLKRRCMELGRYVPAHADVVEDGSFEKTKASSEETMSIGDINSLNPAEVRNVMMDNENKPPTKDDAKVEEHPTLHRPVARISAFSVYNPPGRPTTGSCSKMFPRQSPLIQSPKPDVGSCKLFDSIDCEPMVPSQCGHGCCTADSRESHSNGSLLGPEFVDYLESPSFSSHALISIATDLNNIAWIKSGLENCRNGVTDENAANLTASQGVATASQINFLRQDLKNGFGQFEEGPGMFLGAMQEVLSTKMARQHFAMPAEV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02364 399 Gene3D - 43 95 - -
Pumo9g02364 399 CDD SANT 98 141 IPR001005 -
Pumo9g02364 399 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Pumo9g02364 399 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Pumo9g02364 399 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Pumo9g02364 399 FunFam MYB transcription factor 44 95 - -
Pumo9g02364 399 SMART sant 95 143 IPR001005 -
Pumo9g02364 399 SMART sant 43 92 IPR001005 -
Pumo9g02364 399 CDD SANT 46 88 IPR001005 -
Pumo9g02364 399 Gene3D - 98 144 - -
Pumo9g02364 399 PANTHER MYB PROTEIN-RELATED 44 197 - -
Pumo9g02364 399 ProSiteProfiles Myb-like domain profile. 44 90 IPR001005 -
Pumo9g02364 399 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Pumo9g02364 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 90 IPR017930 -
Pumo9g02364 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02364 Pumo-Chr9 57048217 57052673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02364 25 330 MYB Transcription Factor Family AT3G55730 49.702 9.24e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g02364 Myb_DNA-binding 3.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02364 K09422 - gmx:100781228 730.324