Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02353 ATGGAATTGGAAACCCTCTACCCCCCTTGTTTTATGCCAAATTCAAATTGGTTTGTGCAAGAGAGCCACAGCACAGAGTGGACTAGAGAAGATAACAAGAAGTTTGAAAGAGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCAGCTATGATTCCTGGGAAGACTGTGTTTGATGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGCTATCTTGCCTCTTCTTTCACCTTTGAGCTGGTTGACAACCACAACTATGATGGATGCAGAAGAAGGCCTGCACCTATCAGAGGTTCTGATCAAGAGAGAAAGAAAGGGGTCCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTTTAAAGTATGGTAAAGGAGACTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCAACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGGAGACCTAGCATCCATGATATAACCACTGTTAATCTTACAGAAACTGCTGCATCAGATAAGAACAAGACTCAGTTATTTAATGTGTCTCCCATGATTGCACCACAGCAGAAGCTGAATAGCATGTCAAAAGTACAGCTGGACTGGACTAGCCACTACAATGAAGGATCACTCATGGTTTTCAACCCAAATAGTGATGACTTGTTTGTGTCATCTTCATCTGATATCACTTCCATGGCCCTGAAAATGCAAGGGCAGGATCTCTATGACTGTGCTTTACATGAGGCTTATGCCAAGGTAAAAGTTCCAGGTTTCAGCATGGCTCCTAGAGACTTCAATAATGAAGCTGTTTTTGGCATTCATGCACTGTAA 918 0.4314 MELETLYPPCFMPNSNWFVQESHSTEWTREDNKKFERALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVDNHNYDGCRRRPAPIRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKNKTQLFNVSPMIAPQQKLNSMSKVQLDWTSHYNEGSLMVFNPNSDDLFVSSSSDITSMALKMQGQDLYDCALHEAYAKVKVPGFSMAPRDFNNEAVFGIHAL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02353 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Pumo9g02353 305 CDD SANT 26 72 IPR001005 -
Pumo9g02353 305 FunFam transcription factor MYB1R1 125 176 - -
Pumo9g02353 305 FunFam Transcription factor SRM1 19 86 - -
Pumo9g02353 305 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Pumo9g02353 305 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Pumo9g02353 305 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Pumo9g02353 305 Gene3D - 125 176 - -
Pumo9g02353 305 SMART sant 23 75 IPR001005 -
Pumo9g02353 305 SMART sant 123 173 IPR001005 -
Pumo9g02353 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 241 IPR043363 -
Pumo9g02353 305 CDD SANT 126 170 IPR001005 -
Pumo9g02353 305 Gene3D - 19 86 - -
Pumo9g02353 305 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Pumo9g02353 305 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Pumo9g02353 305 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Pumo9g02353 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02353 Pumo-Chr9 56951469 56953662 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g02353 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02353 - - gmx:778039 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00228 1 3507867 3510296 Pumo9g02353 9 56951469 56953662 ECH
Pumo5g01198 5 27290225 27293043 Pumo9g02353 9 56951469 56953662 ECH
Pumo9g02353 9 56951469 56953662 Pumo9g02353 9 56951469 56953662 ECH
Pumo1g00228 1 3507867 3510296 Pumo9g02353 9 56951469 56953662 PCT