Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02338 ATGGCTTCCTCTTACCGTGACCGCACGTCGGAGTTCCGGTTACTGTCGGAGACTCTGAAGAAGATCGGAGGAGGGACTTCACCTCCGGTTCAACCCGAGAATGCTCCTTCTACCTCTCACGAGTCCTATTCGAGATCCGAGTTCAACCGAAAGGCCTCACGAATCGGGTTGGGGATCCACGAAACCTCGCAGAAGATCGCGAGGCTGGCGCAGCTGGCGAGGAAATCGTCGATGTTCAACGATCCGGCCGTGGAGATTCAGGAGCTGACTGCTCTGATTAAGAACGAGATCACGGCGCTGAACTCGGCTCTCTCCGACTTGCAAACGATTCAGAACATGGATATGGCTGACGGCAGTTACTCGCAGGATAGGATTGTGCATTCGACCGCGGTTTGTGATGACTTGAAGAGCAAACTCATGGGAGCCACGAAGCACCTTCAAGATGTCTTAACTGCTAGGACAGAGAATATCAAGGCTCATGAGAACAGGAAGCAGATATTTTCCAAGAATGCATCAAGAGAGAACCCTTTCCAGCATCAGCCAAAGCCAGCTACTGAGCCACCACCTTGGTCAAATTCGTCAAATGCATCTGAGAGTTTGCAACAAGAATCGGTATTACTGTCAAATGGAGCTCCTGTTGGCAATCAACTAAGACGGAGGTTGGCTGTGGACAACACTCCATCTCAGCAAATGGAAATGTCTATGGTACAGCAGGTTGTGCCTCGGCATGAAAACTATGCTCAAAGTCGGGCAACTGCTCTGCACAATGTGGAATCTACTATCACAGAACTTAGTGGGATTTTCTCGCATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCAATCAGGATTGATGACAATATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGATGGCTTCTAATAAAGATATTTGCCATTCTGATACTTTTCCTCATGATCTTCATATTCTTTGTCGCGTAA 1011 0.4797 MASSYRDRTSEFRLLSETLKKIGGGTSPPVQPENAPSTSHESYSRSEFNRKASRIGLGIHETSQKIARLAQLARKSSMFNDPAVEIQELTALIKNEITALNSALSDLQTIQNMDMADGSYSQDRIVHSTAVCDDLKSKLMGATKHLQDVLTARTENIKAHENRKQIFSKNASRENPFQHQPKPATEPPPWSNSSNASESLQQESVLLSNGAPVGNQLRRRLAVDNTPSQQMEMSMVQQVVPRHENYAQSRATALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRWLLIKIFAILILFLMIFIFFVA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02338 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pumo9g02338 336 PANTHER SYNTAXIN 46 330 IPR045242 -
Pumo9g02338 336 SUPERFAMILY t-snare proteins 44 299 IPR010989 GO:0016020|GO:0016192
Pumo9g02338 336 MobiDBLite consensus disorder prediction 17 47 - -
Pumo9g02338 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Pumo9g02338 336 MobiDBLite consensus disorder prediction 167 201 - -
Pumo9g02338 336 Pfam SNARE domain 281 332 IPR000727 -
Pumo9g02338 336 Gene3D - 41 299 - -
Pumo9g02338 336 SMART tSNARE_6 239 306 IPR000727 -
Pumo9g02338 336 CDD SNARE_syntaxin5 247 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02338 Pumo-Chr9 56693810 56698758 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02338 1 336 SNARE and Associated Proteins AT5G05760 67.160 3.54e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02338 K08490 - gmx:100777383 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02338 9 56693810 56698758 Pumo9g02338 9 56693810 56698758 ECH