Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02330 ATGACGCCATGTATAGTGGGTCTTCCCTTGAGTTCAGAGAGTGATAAGCTTGCTTTACTTGCTTTGAAGCAAAAGATTACCAATGGCGTGCCAAATGCTCTTCCATCATGGAACGAGTCTTTGCATTTCTGTGAGTGGGAGGGTGTTACATGTGGTCACCGCCATATGAGAGTCTTTGTCTTGCACTTGGAAAATCAAAATTGGGGTGGCACTCTTGGACCATCCTTGGGAAATCTAACCTTCCTCAAAGTGCTAATTCTTTCCAACATCAACCTGCATGGCGAAATTCCCACACAACTTGGTCAACTAAATTGGTTGCAGGTTCTTGACTTGAGCCACAACAATCTCCATGGTGAGATTCCTATTCACCTTACCAATTGCTCTAATCTTGAGGTAATTAACTTGTTGTACAATAAACTCACTGGAAAAGTTCCCTCATGGTTTGGAATTGGATCAATGACACGGCTTAGTAAGTTGCTTCTTGGTGCCAATGATCTAGTTGGTACTATCCCACATTCCTTGGGGAATCTTTCATCCCTCCAAAATATTACAATTGCAAGAAATCATTTGGAAGGAAGTATACCTCATGTTTTGGGTCGGTTATCAAATTTGAAGGAATTGAATCTTGGTTTAAATAATTTGTCAGGAGTAGTCCCTGATTCTCTTTATACCCTTTCCAATATTCAAATTTTTGTTCTCGGGGAAAACCAGTTATGTGGTACTCTTCCATCAAATATGCAACTTGCTTTTCCAAATCTTCGAGATTTCTTGGTTGGAGGTAACAACTTCAATGGAACTTTCCCGTCTTCAATATCCAACATCACCGGATTGCATGTGTTTGATATTTCCTCAAATGGTTTTAACGGACCAATTCCTCCCACTTTGGGAAGCTTAAACAAACTTCACAGGTTTCACATTGCTTATAATAATTTTGGAAGTGGGAGAGCTCATGATTTGGATTTCCTTTCATCATTAACCAATTGTACTCAATTGCACACACTTATTTTGGAGGGCAATGAATTTGGTGGTGTGTTGCCAGATCTTATTGCCAATTTTTCTACCAATCTCATGTGGCTTAGTATGGGGTTTAATCAAATATCTGGAATGATACCTAAAGGAATTGGACAGTTAATCGGTTTAACTAAATTCATTATGGTAACTTTTCCAGATTGGATTGGAAAGCTTAAAAATCTAGTCAGATTCGCCCTGGAAGGAAACAAATTGTCTGTCATTTGGTGTCGCTTACAACAACTTGGTGGTGATATCCCTAATCAAACATTTGGCAATCTAGAAGGTTTGATAAAACTCGACTTATCCAACAACTCTTTCACCGGTTCCATTCCTTTAGAGTTTGGAAACTTGAAGCACCTTTCCGTATTATATCTAGACAAAAACAAGTTGTCAGGTGAAATTCCCCCAGAACTTGGCGCTTGTTCCATGTTAACAGAGCTCATGCTGGAGAGAAACTTCTTCCATGGAAGCATACCTTCGTTCTTTGACTCCTTAATATCCCTTGAAATCCTAGACATTTCTAACAACAACTTCTCAAGCACAATCCCTGGTGACCTACAAAATCTGAGATTTTTGAATTCTTTAAACTTGTCTTTTAACAATCTTTATGGTGAGGTTCCCATAGGAGGTGTCTTTAATAACATCACAGAAATTTCGCTCATTGGAAATAAGGATCTCTGTGGGGGGATACCTCAACTGAAGCTCCCTGCATGCTCAAGGTTGCCCTCAAAGAAACTCATCCTCGTCACTGTAATTGAAGTTGTAGGGAGTTTGGTCAGTTTCATTTTCATGATATTTATCAGCATCTATTTGTTCAGGAAAAAGCCTGAAACAATATATTCTTCATGGTGTCTGCAAAATAGGTACGTAAAGGTTTCTTATGGAGAGCTGCACGAAGCAACCAATGGATTTTCTTCATCCAATTTAGTAGGGACCGGAAGCTTTGGTTCTGTATATAGAGGATCCCTTCTCCATTTTGAAAGTCCTGTTGCTGTAAAGTTGTTGAATCTTGAAACTTGTGGGGCATCAAAGAGTTTCGCAGCTGAATGCAACGCTCTAGGAAAAATCAAGCACCAGAATGTTCTCAATATCCTGACATGTTGTTCAAGTATTGATTATAATGGAGATGATTTCAAGGCTCTAGTTTTTGAGTTCATGCCTAATGGGAGTCTACAAAGTTTGCTGCACAGAAATGAAGAGCTCGAGTCTAGAAATTTCAATCTCAAACTTCAACTTATGCTAAATATTGCTCTTGATGTTGCTTATGCATTGGATTATCTTCATCATGGTTCCGAGCAAGTTGTAGTTCACTGTGATATTAAGCCAAGCAACGTTCTTCTTGATGATGACTTTGTTGCCCACTTGGGAGATTTTGGGTTAGCAAGGCTCCTTAATGTGGTCACGGGACATTCCAGCAGAGATCAGGTTAGTTCGGCTACAATTAATGGAACCATTGGATATGTTCCCCCAGGTAAAGTGCTTTCTATCCTTTGA 2505 0.3944 MTPCIVGLPLSSESDKLALLALKQKITNGVPNALPSWNESLHFCEWEGVTCGHRHMRVFVLHLENQNWGGTLGPSLGNLTFLKVLILSNINLHGEIPTQLGQLNWLQVLDLSHNNLHGEIPIHLTNCSNLEVINLLYNKLTGKVPSWFGIGSMTRLSKLLLGANDLVGTIPHSLGNLSSLQNITIARNHLEGSIPHVLGRLSNLKELNLGLNNLSGVVPDSLYTLSNIQIFVLGENQLCGTLPSNMQLAFPNLRDFLVGGNNFNGTFPSSISNITGLHVFDISSNGFNGPIPPTLGSLNKLHRFHIAYNNFGSGRAHDLDFLSSLTNCTQLHTLILEGNEFGGVLPDLIANFSTNLMWLSMGFNQISGMIPKGIGQLIGLTKFIMVTFPDWIGKLKNLVRFALEGNKLSVIWCRLQQLGGDIPNQTFGNLEGLIKLDLSNNSFTGSIPLEFGNLKHLSVLYLDKNKLSGEIPPELGACSMLTELMLERNFFHGSIPSFFDSLISLEILDISNNNFSSTIPGDLQNLRFLNSLNLSFNNLYGEVPIGGVFNNITEISLIGNKDLCGGIPQLKLPACSRLPSKKLILVTVIEVVGSLVSFIFMIFISIYLFRKKPETIYSSWCLQNRYVKVSYGELHEATNGFSSSNLVGTGSFGSVYRGSLLHFESPVAVKLLNLETCGASKSFAAECNALGKIKHQNVLNILTCCSSIDYNGDDFKALVFEFMPNGSLQSLLHRNEELESRNFNLKLQLMLNIALDVAYALDYLHHGSEQVVVHCDIKPSNVLLDDDFVAHLGDFGLARLLNVVTGHSSRDQVSSATINGTIGYVPPGKVLSIL 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02330 834 SUPERFAMILY L domain-like 12 311 - -
Pumo9g02330 834 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 51 319 - -
Pumo9g02330 834 PANTHER OS04G0122200 PROTEIN 84 196 - -
Pumo9g02330 834 FunFam LRR receptor-like serine/threonine-protein kinase EFR 612 722 - -
Pumo9g02330 834 Gene3D Ribonuclease Inhibitor 317 582 IPR032675 -
Pumo9g02330 834 SMART LRR_typ_2 526 551 IPR003591 -
Pumo9g02330 834 SMART LRR_typ_2 502 525 IPR003591 -
Pumo9g02330 834 SMART LRR_typ_2 430 453 IPR003591 -
Pumo9g02330 834 SMART LRR_typ_2 201 224 IPR003591 -
Pumo9g02330 834 SMART LRR_typ_2 153 177 IPR003591 -
Pumo9g02330 834 SMART LRR_typ_2 103 127 IPR003591 -
Pumo9g02330 834 SMART LRR_typ_2 454 478 IPR003591 -
Pumo9g02330 834 SUPERFAMILY Protein kinase-like (PK-like) 616 827 IPR011009 -
Pumo9g02330 834 Pfam Protein kinase domain 643 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g02330 834 SMART serkin_6 641 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g02330 834 Gene3D Phosphorylase Kinase; domain 1 621 722 - -
Pumo9g02330 834 Coils Coil 728 748 - -
Pumo9g02330 834 Gene3D Ribonuclease Inhibitor 11 150 IPR032675 -
Pumo9g02330 834 ProSitePatterns Protein kinases ATP-binding region signature. 647 670 IPR017441 GO:0005524
Pumo9g02330 834 Pfam Leucine rich repeat 421 467 IPR001611 GO:0005515
Pumo9g02330 834 Pfam Leucine rich repeat 481 539 IPR001611 GO:0005515
Pumo9g02330 834 Pfam Leucine rich repeat 179 238 IPR001611 GO:0005515
Pumo9g02330 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672|GO:0006468
Pumo9g02330 834 SUPERFAMILY RNI-like 268 570 - -
Pumo9g02330 834 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 320 578 - -
Pumo9g02330 834 ProSiteProfiles Protein kinase domain profile. 641 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g02330 834 Gene3D Ribonuclease Inhibitor 151 316 IPR032675 -
Pumo9g02330 834 Gene3D Transferase(Phosphotransferase) domain 1 723 831 - -
Pumo9g02330 834 Pfam Leucine rich repeat N-terminal domain 13 51 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02330 Pumo-Chr9 56627514 56631400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02330 11 827 Receptor kinase-like Gene Family AT3G47570 41.829 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo9g02330 Pkinase 2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02330 - - gsj:114384365 1299.65