Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02314 ATGTTTGGGGTGGGTCTGAGGAATATGCTTCGTGGGTCTTCTTCTGGGATTTGGGACATGTGCAGTGATTCAAAAAGTAAACTTTCTTCCCCAACCCTCGTCATGGAGAGCAATCTTCAGAAACAGAATCTAGATGGTCTCTACAACTTCTCGGCTTTGCTTGAATTGTCTGCTTCCGATGATTTTGAAGGTTTCAAAAGAGAAGTGGATGAGAAGGGCTTAGATGTCAACGAGGCAGGCTTTTGGTATGGAAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACGAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCACTCAGGTGCTCAAATATGTTCTTGAGACAGGAGATGTTGATGTGAACAGGGTCTGTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGTTGCTGGGGGCTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAGTGTCTTGATGCCAGTGGCAACAAGCCGGTTAATCTGATTGCTCCTGCCTTTGATTCTCCTTCCAAATCGCGAAGGAAGGCTATGGAGTTGTTCCTCACGGGTGGGGAAAGAGATGAACTCATGAGCTCGGAGATGGAGCTACAGATGTTTTCTGTTCCAGAGAAAAAAGAAGGAAGTGATAAGAAAGAATACCCTGTTGATATATCGTTGCCTGACATCAACAACGGTGTATATGGAACAGATGAGTTTAGGATGTACAGCTTCAAGGTGAAGCCTTGCTCAAGGGCTTACTCCCATGACTGGACGGAGTGTCCATTCGTTCATCCAGGGGAGAACGCGAGGAGGAGAGACCCACGGAAATACCCTTATAGCTGTGTTCCTTGCCCAGAGTTTCGCAAAGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCTCATGGTGTTTTCGAGTCCTGGCTACATCCTGCCCAATACCGAACAAGGCTTTGCAAGGATGAGACTGGCTGCACCAGAAAAGTCTGCTTCTTTGCTCACAAACCTGAAGAGCTACGCCCTGTGTATGCTTCCACTGGGTCAGCTATGCCATCACCAAAATCTTATTCAGCTAGTGGACTTGACATGACAGCGATGAGTCCATTGGCTCTTAGTTCCACATCTTTGCCTATGCCAACTGTTTCAACCCCACCCATGTCTCCCTTGGCAGCAGCTTCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAAATAAACCTTACTCCACCATCGTTGCAGCTCCCAGCACAGCAGCAGCAGCAGCAGCAATTGATTGAAGAGATTGCCAGGATCTCTTCCCCATCTTTCCGGAGCAAGGAATTCAATAGGATTGGTGATTTGAATCCAACTAACCTTGATGACCTGTTAGCATCTGCTGACCCTTCTGTATTATCTCAACTACATGGGCTTTCTGTGCAACCTTCAACACCCACACAAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAGCTGCAGTGATGAATTCCAGGTCCGCTGCCTTCGCAAAGCGAAGCCAAAGTTTTATTGATCGTGGAGCTGCAACCCACCATCTTGGGCTGTCTTCAGTTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGATTGGAGTTCCCCTACTGGGAAACTGGATTGGGGCGTGAATGGAGACGAGCTGAACAAGCTGAGGAAATCTGCTTCCTTTGGGTTCAGAAATAATGGGGTAACTGCATCCCCCATAGCACATCCAGAATTTGGCGCTGAGCCAGATGTCTCGTGGGTTCATTCATTAGTTAAAGATGTTCCCTCTGAGAGGTCTGAGATGTTTGGTGCTGAGAAGCAAAAATATGATCTCAGTAAAGAGATGCTTTCACCATGGGTGGAGCAGCTGTATATAGAGCAGGAGCAGTTGGTAGCATGA 2004 0.481 MFGVGLRNMLRGSSSGIWDMCSDSKSKLSSPTLVMESNLQKQNLDGLYNFSALLELSASDDFEGFKREVDEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSTQVLKYVLETGDVDVNRVCGSDRATALHCAVAGGSESSLEIVKLLLDAGADAECLDASGNKPVNLIAPAFDSPSKSRRKAMELFLTGGERDELMSSEMELQMFSVPEKKEGSDKKEYPVDISLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTAMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGNLWQNKINLTPPSLQLPAQQQQQQQLIEEIARISSPSFRSKEFNRIGDLNPTNLDDLLASADPSVLSQLHGLSVQPSTPTQSGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHLGLSSVSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASPIAHPEFGAEPDVSWVHSLVKDVPSERSEMFGAEKQKYDLSKEMLSPWVEQLYIEQEQLVA 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02314 667 ProSiteProfiles Ankyrin repeat region circular profile. 130 164 - -
Pumo9g02314 667 Gene3D - 285 346 - -
Pumo9g02314 667 ProSiteProfiles Zinc finger C3H1-type profile. 283 310 IPR000571 GO:0046872
Pumo9g02314 667 Gene3D - 51 191 IPR036770 -
Pumo9g02314 667 ProSiteProfiles Ankyrin repeat profile. 130 165 IPR002110 GO:0005515
Pumo9g02314 667 Pfam Ankyrin repeats (3 copies) 93 161 IPR002110 GO:0005515
Pumo9g02314 667 SMART c3hfinal6 318 341 IPR000571 GO:0046872
Pumo9g02314 667 SMART c3hfinal6 283 309 IPR000571 GO:0046872
Pumo9g02314 667 FunFam Zinc finger CCCH domain-containing protein 66 241 309 - -
Pumo9g02314 667 SMART ANK_2a 130 162 IPR002110 GO:0005515
Pumo9g02314 667 SMART ANK_2a 95 125 IPR002110 GO:0005515
Pumo9g02314 667 PANTHER UNKEMPT FAMILY MEMBER 55 629 IPR045234 -
Pumo9g02314 667 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 308 IPR000571 GO:0046872
Pumo9g02314 667 SUPERFAMILY Ankyrin repeat 46 176 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02314 Pumo-Chr9 56330562 56332992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02314 48 662 C2H2 Transcription Factor Family AT5G12850 40.143 4.31e-143 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo9g02314 Ank_2 2e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02314 - - gmx:100783376 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02314 9 56330562 56332992 Pumo9g02314 9 56330562 56332992 ECH