Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02305 ATGGAAAGTTACTACTATTCTTCTGGCTGGCCACTGGCTCAATGCAACTCTGCACCAAACAGTAATCAGTTATCTCCTTTTTCGGTGCCAACAACAACAACAACAACAACACAAACACTCCCTCTTGTTGCTTCTTCTGACCCTGCAGCTGCAGCCTCTCTTCAATTTGGTGAGTTCCCTTCGTGGCCTGCACCCATTGCAGAAGATAGAGCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCATGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCATGGATGTCAGCAAAGCCATTACTGTTCCAACTGAAACTGATGAAGAAAACATAGTAATCAAAGCTTCTGTTTGCTGCGATGATCGACCGGAACTGTTCCCTGAGCTCATCCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAGGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCTCAAAGGATAGTGAAGAAGAGAATAGTGTTTGCCTTAGCACTCTCAAACAATCCCTTAAATCTGCTGTGAACAAAATTGCTTCGTTATCTGTGGCAACAAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTACGTACAATAA 735 0.4476 MESYYYSSGWPLAQCNSAPNSNQLSPFSVPTTTTTTTQTLPLVASSDPAAAASLQFGEFPSWPAPIAEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPMSDKMDKAALLGSVVDHVKDLKRKAMDVSKAITVPTETDEENIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEEENSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFLPSHYVQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02305 244 Gene3D - 67 131 IPR036638 GO:0046983
Pumo9g02305 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 125 IPR036638 GO:0046983
Pumo9g02305 244 SMART finulus 79 128 IPR011598 GO:0046983
Pumo9g02305 244 Pfam Helix-loop-helix DNA-binding domain 76 122 IPR011598 GO:0046983
Pumo9g02305 244 CDD bHLH_AtAIG1_like 68 141 - -
Pumo9g02305 244 CDD ACT_UUR-ACR-like 149 214 - -
Pumo9g02305 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Pumo9g02305 244 PANTHER TRANSCRIPTION FACTOR BHLH30 53 241 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02305 Pumo-Chr9 56220051 56221919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02305 20 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.935 3.29e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g02305 HLH 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02305 - - gmx:100306102 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02305 9 56220051 56221919 Pumo9g02305 9 56220051 56221919 ECH
Pumo1g00272 1 4296264 4298190 Pumo9g02305 9 56220051 56221919 PCT