Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02303 ATGATGACCGGCGGCGACGATCGCGTGAAGGGTTCATGGAGTCCTCAGGAGGATGCGACGTTGCTGAAATTGGTGAATGAGCACGGAGCACGCAACTGGTCCGTCATAAGCGCCGGCATTCCCGGCCGTTCCGGCAAGTCGTGTCGTCTGCGGTGGTGCAATCAGCTGAGTCCGGAGGTGCAGCACCGTCCTTTCACGCCTGCGGAGGACAAGATCATCGTAAAGGCGCACGCTATTCACGGAAACAAGTGGGCCACCATCTCGCGCCTCCTTCCTGGCCGCACGGACAACGCCATCAAGAATCACTGGAATTCCACTCTCCGCCGCCGTCGCACGGCGGAGCAGTCCTCCTCCTCGTCGGGATCTCCACCGGCCAAACGTCACTCTTCCTTGTTTGACACGCTTCCGCCTTTCAAGAAGCAGTGCATTGAAAGGGAAAATGAAGAAGAGCGAGTGCTGAATCCCGTTACGACGTCGTTGAGCCTTTTTCCTCCCGGGGAAAAATCAGAGGAGGAAGAAGAGGAAGAAGAAAAGGAGAAAGAAGAGTTTCAAGTGAATGTTAATCACAAGGTCGCGGATCAGAATTACTTTATGCAGATGATGCAGCGGATGATAGCGGAAGAAGTTAGGAATTACATGGAGAGTTTGCGCAATTGCCAAAGAGACGGTCTCTCCCTTGAGCCTGGATGGCGCACGGAAATAAAACCAAGGGCATATGGGAAATTCACCTCTATGCAGGGATGA 744 0.539 MMTGGDDRVKGSWSPQEDATLLKLVNEHGARNWSVISAGIPGRSGKSCRLRWCNQLSPEVQHRPFTPAEDKIIVKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRTAEQSSSSSGSPPAKRHSSLFDTLPPFKKQCIERENEEERVLNPVTTSLSLFPPGEKSEEEEEEEEKEKEEFQVNVNHKVADQNYFMQMMQRMIAEEVRNYMESLRNCQRDGLSLEPGWRTEIKPRAYGKFTSMQG 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02303 247 Gene3D - 63 131 - -
Pumo9g02303 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Pumo9g02303 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 56 IPR017930 -
Pumo9g02303 247 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Pumo9g02303 247 PANTHER MYB PROTEIN-RELATED 10 125 - -
Pumo9g02303 247 Coils Coil 166 186 - -
Pumo9g02303 247 MobiDBLite consensus disorder prediction 147 181 - -
Pumo9g02303 247 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Pumo9g02303 247 MobiDBLite consensus disorder prediction 110 127 - -
Pumo9g02303 247 ProSiteProfiles Myb-like domain profile. 5 56 IPR001005 -
Pumo9g02303 247 CDD SANT 64 107 IPR001005 -
Pumo9g02303 247 MobiDBLite consensus disorder prediction 101 133 - -
Pumo9g02303 247 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Pumo9g02303 247 Pfam Myb-like DNA-binding domain 64 106 IPR001005 -
Pumo9g02303 247 Gene3D - 9 61 - -
Pumo9g02303 247 SMART sant 61 109 IPR001005 -
Pumo9g02303 247 SMART sant 9 58 IPR001005 -
Pumo9g02303 247 FunFam Transcription factor MYB44 64 110 - -
Pumo9g02303 247 CDD SANT 12 54 IPR001005 -
Pumo9g02303 247 FunFam MYB transcription factor 10 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02303 Pumo-Chr9 56207950 56212360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02303 7 217 MYB Transcription Factor Family AT4G37260 40.892 6.07e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g02303 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02303 - - gmx:778069 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02303 9 56207950 56212360 Pumo9g02303 9 56207950 56212360 ECH