Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02302 ATGTCGATTCGGGACTCGGAATCACTCAATTGGCACTACAACACCGAACTCGACGACCAAACCCTCGAAATCCGCGGCCGCAAGCTCTTCTTCATCATCGTCCTCTTCTCCATCATCCTCCTCTTCACCGCACTCTTTGTCTTCGCGCGCCGGATCTGCCGCCACCACAGCCTCCTCCCCGACGCCGTACCGCCGCGCCACGCGCCGCCGCTGTCTCCGCCGCCGCAGAACAGCGGCCTCGACGCCGCTGCGATCAAGAGGCTCCCGATCGTCCTCCACCAGTCGCCGGCGGCGGAGGAGACGGAGTGCTGCATCTGCCTTGGCGCATTCGTGGACGGCGAGAAGCTGAAGGTTCTGCCAGGGTGCGAGCATAGCTTCCATTGCGAGTGCGTGGACAAGTGGCTCACGAATCACTCCAATTGCCCTCTCTGCAGAGCTTCGCTCAAGCTCGATTCTTCCTTCCCCGGGATTTTGATCCAATCACCACCTGTTAGAACTAGCCTTCCTGTCTGA 513 0.6062 MSIRDSESLNWHYNTELDDQTLEIRGRKLFFIIVLFSIILLFTALFVFARRICRHHSLLPDAVPPRHAPPLSPPPQNSGLDAAAIKRLPIVLHQSPAAEETECCICLGAFVDGEKLKVLPGCEHSFHCECVDKWLTNHSNCPLCRASLKLDSSFPGILIQSPPVRTSLPV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02302 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 150 IPR013083 -
Pumo9g02302 170 Pfam Ring finger domain 102 145 IPR001841 -
Pumo9g02302 170 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 152 - -
Pumo9g02302 170 SUPERFAMILY RING/U-box 90 151 - -
Pumo9g02302 170 SMART ring_2 103 144 IPR001841 -
Pumo9g02302 170 FunFam RING-H2 finger protein ATL66 72 150 - -
Pumo9g02302 170 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02302 Pumo-Chr9 56201088 56201937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02302 9 153 C3H Transcription Factor Family AT3G11110 46.667 3.47e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02302 - - gmx:100794554 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00273 1 4307738 4309246 Pumo9g02302 9 56201088 56201937 PCT