Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02301 ATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGCCACCACCGCCACAGAAACCACTCCCAACGAAACATCTAACAGTAACAGCAATAGCAGCAGCAACGTCAAAAACAGTCGCAAGTGCAAAGGTAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTGAGACAACGAAGCTGGGGCAAGTGGGTCGCCGAGATCCGCGAGCCACGTAAGCGAACGCGCAAGTGGCTCGGAACCTTCGCCACCGCCGAGGACGCCGCCAGAGCCTACGACCGCGCCGCCATCATCCTCTACGGTTCCAGAGCACAGCTTAATCTCCAACCCTCCGGTTCCTCTTCTCAATCTTCCTCTTCTCGTTCCTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCTTCAGGTTTTAGTTTCAATTTTCCCTTCAACGCCGCCGCCGCCACCACTGTGCCTTACCCTTATAACAATACTTACAATTACACCCCACCCGTGTTGTGCCCTATTGATAATAGTAACAATAATAGTACTATCGTGCAAGTTCATCCACAACATCACTATCGTTGTCAAGAGGAAGTGGTGCAAGTGCAAGTGCCGCATACTCTATCAACATCGTACCAACATTCTGAATCTGATGTGGGTTTAGGTGGGAATAATATTGTTGATATTTCTTCTATTAGATCAACCTCGTACCAAAGGCATGGTTACCAGGATAATAATAATAATAATAATAATAATAATAATCATGTGCATGTGCAAGTGCAACATGGGGTTTTGTCGAATCAACAGCAACATCAGAATAGCGTGGTGGAGGGAGTGAATTCCTCCTCCGTTGTGGGTTCGGTTGCGTCTTCTCAGGTAAATATGGATGCTTCGGTGGATCCGGATCTGCCGTTGGTGGGGACGGTGGGGCTTGGATCTTCGCCTTTGTGGTCGTTGGCGAATGAGGATGATTACACTGGTAGTTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAG 1023 0.4858 MASLQPQPQETKPTATTATETTPNETSNSNSNSSSNVKNSRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSGSSSQSSSSRSSSSSTQTLRPLLPRPSGFSFNFPFNAAAATTVPYPYNNTYNYTPPVLCPIDNSNNNSTIVQVHPQHHYRCQEEVVQVQVPHTLSTSYQHSESDVGLGGNNIVDISSIRSTSYQRHGYQDNNNNNNNNNNHVHVQVQHGVLSNQQQHQNSVVEGVNSSSVVGSVASSQVNMDASVDPDLPLVGTVGLGSSPLWSLANEDDYTGSLWDYNDPFFFDL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02301 340 FunFam Ethylene-responsive transcription factor 2 55 113 - -
Pumo9g02301 340 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Pumo9g02301 340 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Pumo9g02301 340 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 274 - -
Pumo9g02301 340 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Pumo9g02301 340 MobiDBLite consensus disorder prediction 1 41 - -
Pumo9g02301 340 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Pumo9g02301 340 CDD AP2 55 112 IPR001471 GO:0003700|GO:0006355
Pumo9g02301 340 MobiDBLite consensus disorder prediction 43 57 - -
Pumo9g02301 340 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Pumo9g02301 340 MobiDBLite consensus disorder prediction 1 57 - -
Pumo9g02301 340 MobiDBLite consensus disorder prediction 110 135 - -
Pumo9g02301 340 Pfam AP2 domain 55 103 IPR001471 GO:0003700|GO:0006355
Pumo9g02301 340 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02301 Pumo-Chr9 56191661 56192683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02301 41 340 AP2-EREBP Transcription Factor Family AT2G40220 42.771 2.01e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g02301 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02301 K09286 - gmx:100779779 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02301 9 56191661 56192683 Pumo9g02301 9 56191661 56192683 ECH