Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02299 ATGAAGGGTTATGAGCCACGTTCAAGCTCTTCTTGTGCAGCTTGCAAGTTCTTGAAGAGAAGATGCATACCCAATTGCATATTTGCACCTTACTTTCGTTCTGATGAGTGCAAGAAATTCGCCAAGGTGCACAAGGTGTTTGGGGCCAGCAATGTGAGCAAGATCCTCGTTGAGGTTCCTGAGGAGCAGAGAGAGGACACGGTGAACTCGCTTGCTTATGAGGCAGAAGCAAGGCTTAGGGACCCCGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAAAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGCTAAGGACCGTCTTGCTCGTTATGCTGCTGCTGCTACTACTACCACCCCTAATTCTTCCACTACTACTTCTGATGCCTTCAATAATGGCCTTGTTAGTTTGCCACCCTTTCCTGAATTTTTCACTTGTGCTGATTTCAATGACAACTTCTGCCACACCTCTTCGTCTCAATCGTTGAGCAGACATGAAACGGTGGATGATTTCATTCAAATCCCTTATATATTTTGA 546 0.4597 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYAAAATTTTPNSSTTTSDAFNNGLVSLPPFPEFFTCADFNDNFCHTSSSQSLSRHETVDDFIQIPYIF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02299 181 Coils Coil 90 117 - -
Pumo9g02299 181 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Pumo9g02299 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 130 - -
Pumo9g02299 181 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02299 Pumo-Chr9 56168558 56169736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02299 1 116 AS2 family AT3G11090 76.724 3.25e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo9g02299 LOB 4.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02299 - - gmx:100777635 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02299 9 56168558 56169736 Pumo9g02299 9 56168558 56169736 ECH