Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02298 ATGAATAATGTTCTATCTGCAATGATGGTCTCCCCAGGCTTGTTACCATCAGGGACCTTGCTAGATTCTTTGATTCATGTGTGCAATGAAGTTGGCTCAATGGAGAAGTTTCCCTTGGTACACACAAGGAACGTTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACGGATACTCCACTTCCTCCTTCTTCAATCCTGTGTCTCACAGAACTCTTTTCTGTGATAAGAAGAGTCAAAGTTTTGATCCAAGACTGCAAGGATGGAAGTTCTCTTTGGAGTCTCATACAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTTGTTAAGGAGATGGGAAGGGCCCTTGATATCCTTCCTTTGAGGTTACTCAATGTAACATCAGATATTAGGGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCAAAGAAGAGAACAGCTTATACAAGTAATGGCCAACAACAGTTTACAAAAAAAGAAGAACAAGGGGTTCGTTGACTTTGGCAAAGTGGAAGAGATATTAAGCAGCATTGGATTGAGAACCCCATCAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTAATTGTTGTTTCCAATATAAGCAATCTCATATCTCTGGTCTCATATTCCAAATCCATGATATTCAGAGATGGAGAGAGTGATAGAAATGAAGAAGATTGTAAGCCACTATCTTCATTTTTGTATAACAAAGTATATGATAGTTCTTCATCCTCTCAGTCCATGACACCTAATGTTCCTGATGAATTTCGTTGTCCAATTTCACTTGACTTGATGAGGGACCCCGTGATTGTGTCATCTGGGCACACTTATGATAGAACCTCAATTGCACAATGGATAAACTCTGGCCATCACACTTGCCCCAAAAGTGGACAAAGGCTAATTCACACTGCTCTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCCATGACAACAATGTCCCAGTGAATGAGCCTACAACTGAGGGAAACAACAACAACAAAAAGAAGAACCCGAAGGAGGAAGCTATTGACCATATTTCTGCAAACAAAGCAGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACTGGTTCTGCTGACATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTCGCGAAAACCGGCATGGTTAACCGAAGTGTCATAGCTGAGGTAGGGGCTATTCCCTTTCTTGTAACACTTCTAGGATCTCAAGATTCAAGAATCCAAGAGCATGCAGTGACAGCCTTGTTCAACCTCTCGATATTCGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGATAGCATAGTGGAAGTACTTGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCATCAATATATAGCTTGTCTATGGTGGATGAGTGCAAAGTGCAAATTGGAGGAAGACCAAGGGCAATACCTGCCTTAGTTGGACTATTGAAAGAAGGCACTACAATAGGGAAAAGAGATGCTGCAAGTGCACTGTTCAACCTTGCAGTTTACAATCCTAACAAGGCAGGTGTGGTAAAAGCTGGGGCAGTGCCTCTGCTGGTTGAGTTGCTGATGGATGACAAGGCAGGCATAACAGATGATGCACTTGCAGTGCTTGCTTTGCTCCTTGGATGCTCTGAGGGGCTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGGTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTAGGACTGTGCAAAGAAGAGGGGGAAGTGGTGGCAAGGAGGCTCTTCGCAAATCCAAGGAGCATTCCTTCTCTTCAAAGCTTGGCTGCTGATGGTTCTTTGAGAGCTAGGAGAAAAGCAGATGCACTGCTTAGGTTCCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTGTTTGA 2055 0.4302 MNNVLSAMMVSPGLLPSGTLLDSLIHVCNEVGSMEKFPLVHTRNVSSMIRRIKLLSSLFEEIQETDTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILPLRLLNVTSDIREQVELLHKQAKRAELLIDPRELQRREQLIQVMANNSLQKKKNKGFVDFGKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIVVSNISNLISLVSYSKSMIFRDGESDRNEEDCKPLSSFLYNKVYDSSSSSQSMTPNVPDEFRCPISLDLMRDPVIVSSGHTYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHDNNVPVNEPTTEGNNNNKKKNPKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAASIYSLSMVDECKVQIGGRPRAIPALVGLLKEGTTIGKRDAASALFNLAVYNPNKAGVVKAGAVPLLVELLMDDKAGITDDALAVLALLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLFANPRSIPSLQSLAADGSLRARRKADALLRFLNRCCSQPHHSV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02298 684 PANTHER U BOX DOMAIN-CONTAINING 43 676 - -
Pumo9g02298 684 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Pumo9g02298 684 Pfam Armadillo/beta-catenin-like repeat 427 463 IPR000225 GO:0005515
Pumo9g02298 684 CDD RING-Ubox_PUB 284 336 IPR045210 -
Pumo9g02298 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Pumo9g02298 684 FunFam RING-type E3 ubiquitin transferase 490 677 - -
Pumo9g02298 684 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Pumo9g02298 684 Gene3D - 513 673 IPR011989 -
Pumo9g02298 684 SMART arm_5 383 422 IPR000225 GO:0005515
Pumo9g02298 684 SMART arm_5 465 506 IPR000225 GO:0005515
Pumo9g02298 684 SMART arm_5 590 631 IPR000225 GO:0005515
Pumo9g02298 684 SMART arm_5 549 589 IPR000225 GO:0005515
Pumo9g02298 684 SMART arm_5 424 464 IPR000225 GO:0005515
Pumo9g02298 684 SMART arm_5 510 548 IPR000225 GO:0005515
Pumo9g02298 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Pumo9g02298 684 Gene3D - 369 512 IPR011989 -
Pumo9g02298 684 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Pumo9g02298 684 FunFam RING-type E3 ubiquitin transferase 282 356 - -
Pumo9g02298 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Pumo9g02298 684 SUPERFAMILY RING/U-box 270 357 - -
Pumo9g02298 684 SUPERFAMILY ARM repeat 395 673 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02298 Pumo-Chr9 56154180 56156234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02298 23 679 U-box Gene Family AT3G46510 39.065 1.44e-131 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02298 - - gmx:100793498 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02298 9 56154180 56156234 Pumo9g02298 9 56154180 56156234 ECH