Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02284 ATGGGAGGAAATTCCCCTTGTGCCTCATGCAAATTGCTGAGACGCCGGTGCACAAGAGATTGCACCTTCGCTCCTTATTTTCCTTCTGATGAACCTCAAAAGTTTGCCATAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAACTTCCAGTTCACCAGAGAGCAGATGCAGTGAGTAGTCTAGTGTATGAGGCAAATGCAAGAGTGAGGGATCCTGTGTATGGTTGTGTTGGAGCCATATCCTACTTGCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTTGCTCAAGCAGAGATACTCTGCATCCAGATGGAACATGAGCCAGTGATGCCAACCTCAGAAATTGATCTAGATCACAAGTCTTACTTTCTCCAAAATGACCTCTCTCAGTTTCTTGGCTTTGACACTTCTAGCAATGTAATGCACTATTCCTCCCAGCAATTTTGCCCATGA 474 0.4451 MGGNSPCASCKLLRRRCTRDCTFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMEHEPVMPTSEIDLDHKSYFLQNDLSQFLGFDTSSNVMHYSSQQFCP 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02284 157 Coils Coil 85 105 - -
Pumo9g02284 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Pumo9g02284 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 118 - -
Pumo9g02284 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02284 Pumo-Chr9 56020979 56021842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02284 3 131 AS2 family AT2G30130 80.451 1.91e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo9g02284 LOB 8.5e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00287 1 4469094 4469949 Pumo9g02284 9 56020979 56021842 ECH
Pumo9g02284 9 56020979 56021842 Pumo9g02284 9 56020979 56021842 ECH
Pumo1g00287 1 4469094 4469949 Pumo9g02284 9 56020979 56021842 PCT