Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02280 ATGCATTGTGATGATCTAAATGACAAGGTTACTAGAAGTTTTGGACATGAATCCTCTGAAATTCCTTCCAAATATCATCATCTAACTAGTACCCCTTCAAAGAGGAACGATGTTAAATTGTTAACTTTTGAGTCTTATAATTATCCTGCAAAGTCAGATGATGCAGAAAAGAGTGATGATTTGTCATTGAGATATCATTGTAGTTATGGCCCCCCTAGGTCACAGAGGAAGAGTTTAAGTGGTCTGGATGATATGGTGGATCTTGGAAATAAATGGGAAGGGATTAGTTCCAATAATGGAGTTCAAGGGAAACGACCTCGTACAACATATTTAAGAAGTAGAGATCATGGAGAAGAAAAAAGGTACAATTATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCATACTTGAAGAATATTAATACAATACCAACCAAAGAAGAACCATCTATTGCTGACCAGTGGAAGGAAAACAACACAACAAGCAGCATTGGGCAAAAGACAGAAACTGAGATGCTCAATGAAGAGGATGCGGAAGAAGTATCTGAAATGGATATGCTGTGGAGAGAACTGGAAGTGTCATTGGCATCATGTTATCTAGAAGAAGACACAGAGGATTCAAATGCTGTTTTCACTGAGATTCCGGAAGAGCCGAACCAAGGTTGTCCACATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAGCACTGAGATCAAATATATTACACCACCCTTTATTCAACATTCAGTGTATCACCAAGAGGAGAAGCAGAGTCCTGAAGAAGATTCAAAGACCAAGGCTGATGAGGATGATGACATGGATCTTTTCCCAACTCTAGACTCTCCCGAAAAACCTGTGTCTGAAGAAAATGATAACGTTTGGGCATTAATACCCGAACTTAAAGCAAAGTTGCACGCCCACCAGAAGAAAGCATTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGACCCCGGATTAATGGAAGCATCATCCAAAAGAAGAGGTGGCTGTGTGATATCCCATTCTCCTGGAGCAGGAAAAACGTTTCTCATCATCGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGGCCTCTAGTCCTTGCTCCAAAAACAACACTCTATACTTGGTACAAAGAATTTATCAAGTGGGACATTCCTATACCAGTGTATCTGATACATGGTCGTCGAACCTACCGGGTATTCAAGCAGAAATCAATGATTGCTATTCCTGGAGCTCCTAAGCCCACTGATGATGTCAGGCATGTTTTGGATTGCCTTGATAAGATACAAAAATGGCATTCGCACCCGAGTGTTCTGATCATGGGCTATACTTCATTTTTAACATTGATGCGAGAGGATTCGAAGTTTGCACACAGGAAATACATGGCTAAGGTATTGAGGGAAAGCCCTGGGATCATGGTGCTGGATGAAGGGCACAATCCTAGAAGCACTAAATCTAGGTTGAGAAAAGTTTTGATGAAAGCGCAGACAGAATTGAGAATACTGCTTTCTGGTACATTGTTTCAGAACAATTTCTGCGAATACTTCAACACTTTGTGCTTGGCAAGACCAAAGTTTATTCATGAAGTACTGAAAGCATTGGATCCGAAATACAGGAGGAAAGGGAAAGTGGCGAAAAAAGCGAGTCACTTATTAGAGTCACGGGCTAGAAAATTCTTCTTAGACCAAATTGCTAAGAAAATTGACTCAAAAAATGGTAGGGAGAGGCGGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATAGATGTGTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTGCAAATTTATACATTGCTAATGAATTCAACTGATACACAGCATGAGATTTTGCATGAACTGCACAAGAAAATGGCCAAGTGCAATGGATACCCTCTGGAGTTGGAGCTTTTGATAACTCTAGGTTCAATACATCCTTGGTTGGTCAAAACAGCAGTATGTGCTGAGAAATTTTTCGGTCCGGCACAATTGATGGAGCTAGAGAAATGCAAGTTTGATTTGAAAATAGGGTCCAAAGTAAGATTTGTTTTGAGCCTTATCTATCGCGTTGTCAAGAAGGAGAAGGTTCTTATATTTTGCCACAACATTGCACCTGTAAAGTTATTTGTGGAATATTTTGAGAAGTACTTTGGATGGATAAAAGGTAGGGAAGTGTTGGTGCTAACTGGGGAACTAGAGCTGTTTGAAAGGGGTAGAGTAATGGACAAGTTTGAGGAGCCTGGTGGAGTATCAAAGATACTACTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTAACAGCTGCATCAAGAGTGATCATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCCATTGCCCGCGCCTTTCGCCCGGGTCAGCAGAAAGTGGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATCTTTAGTGAGGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGGGAAATGGTTGCGGAGGACCGGTCTAAATCATTCCATATGATCATGAAGAATGAAAAAGCCTCTTCTACCAACAAATAA 2700 0.4081 MHCDDLNDKVTRSFGHESSEIPSKYHHLTSTPSKRNDVKLLTFESYNYPAKSDDAEKSDDLSLRYHCSYGPPRSQRKSLSGLDDMVDLGNKWEGISSNNGVQGKRPRTTYLRSRDHGEEKRYNYKDRTLNAAAYKDLINSYLKNINTIPTKEEPSIADQWKENNTTSSIGQKTETEMLNEEDAEEVSEMDMLWRELEVSLASCYLEEDTEDSNAVFTEIPEEPNQGCPHDFRMNEEIGIYCYRCGFVSTEIKYITPPFIQHSVYHQEEKQSPEEDSKTKADEDDDMDLFPTLDSPEKPVSEENDNVWALIPELKAKLHAHQKKAFEFLWQNIAGSMDPGLMEASSKRRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSMIAIPGAPKPTDDVRHVLDCLDKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKAQTELRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYRRKGKVAKKASHLLESRARKFFLDQIAKKIDSKNGRERRQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILHELHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFGPAQLMELEKCKFDLKIGSKVRFVLSLIYRVVKKEKVLIFCHNIAPVKLFVEYFEKYFGWIKGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASSTNK 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02280 899 CDD DEXHc_ATRX-like 317 547 - -
Pumo9g02280 899 Pfam Helicase conserved C-terminal domain 700 816 IPR001650 -
Pumo9g02280 899 MobiDBLite consensus disorder prediction 266 285 - -
Pumo9g02280 899 Gene3D - 293 584 IPR038718 -
Pumo9g02280 899 SMART ultradead3 313 547 IPR014001 -
Pumo9g02280 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 544 IPR027417 -
Pumo9g02280 899 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 704 864 IPR001650 -
Pumo9g02280 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 879 IPR027417 -
Pumo9g02280 899 MobiDBLite consensus disorder prediction 265 299 - -
Pumo9g02280 899 CDD SF2_C_SNF 692 828 - -
Pumo9g02280 899 SMART helicmild6 728 817 IPR001650 -
Pumo9g02280 899 Gene3D - 674 891 IPR027417 -
Pumo9g02280 899 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 342 542 IPR014001 -
Pumo9g02280 899 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 26 895 IPR044567 GO:0080188
Pumo9g02280 899 MobiDBLite consensus disorder prediction 97 119 - -
Pumo9g02280 899 Pfam SNF2-related domain 330 585 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02280 Pumo-Chr9 55965492 55968855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02280 749 835 RAD5 or RAD16-like Gene Family AT5G22750 40.230 4.72e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo9g02280 SNF2_N 1.8e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02280 K10875 - gmx:100811703 1657.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02280 9 55965492 55968855 Pumo9g02280 9 55965492 55968855 ECH
Pumo1g00293 1 4528013 4535496 Pumo9g02280 9 55965492 55968855 PCT