Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02278 ATGGGTACTTATGATCAAGTTTCTCTTAAGCCCTTGGATTCTTCTAGAAAGAGGAAAAGTAGGTGCAGAGCAGATGGTTCTAGATCCGTGGCTGAGACTATTGCAAAGTGGAAGGAATACAATGAGCATCTTTATTCTGGCAAAGATGATGGTAGGTCAAGTTGTAAGGCGCCAGCTAAAGGTTCGAAGAAAGGGTGCATGAAAGGGAAGGGAGGACCCCAAAACTCTCAGTGTAACTACAGAGGAGTAAGGCAGAGGACATGGGGGAAATGGGTTGGTGAGATTAGGGAGCCAAATAGAGGGAGTAGGCTTTGGTTGGGTACCTTCTCTACAGCCCAAGAAGCTGCTCTTGCCTATGATGAAGCTGCTAGAGCCATGTATGGCCCTTGTGCACGCCTCAACTTTCCCGACATCTCAGATTATGCTTCTGTTAAGGAATTGTTTAAGGACTCTTCGTTGGCTGCATCGTCTTCTTGTTCTTCGGCGGCAACTGCAACATCTGAGACAACTACTATATCCAATCAATCTGAGGTTTGTGCAGCTGAGGATGTTAAAGAGAAGCCTCGACCTGTGAATGTGAATTATTGTCATAAGGCTTATGAATCTGCCTCGCCAACTAGCAGAATGAAGCAAGAGCCTAAGGATGAGGCTGTGGATCACATGGACCCTGGGACTGGGGAATTTCAAGATGTCAGACCTGAAGGAACACATGATGCTGGGCAGGTTTCAGAGGATGTAAATAAAGATCAGATGGACTTTTCATGGATTGATGGCTGCTTTGACTTTAATGACGATTACTTGAAGAGCTTTTCCACGGATGAGTTATTTCAGGTGGATGAGCTTTTGGGGAATATAGATAATAACCCAATTGATGACTCTGGGTTGTTGCAAGGTTTGGATTTTGGACAAATGGGTTTTCCTGGAGATGGTAATCCTCAGGTTGAAGAAATGCCTTCAAGCTTTATTTATCAGTTGCAAAATCCAGATGCCAAGTTGTTGGGAAGTTTGCCCCATATGGAGCAGACACCATCAGGTGTTGATTATGGATTAGATTTCTTGAAAACAGTGGAGCCAGGGGACTACAATGGTGGAGGGGAAGATTCGCGATTTCTTAATTTGGATGATGATCTGAACCATGATTCAAAGGGCATGCAAGCAAGGAAGGATGACTAG 1173 0.4459 MGTYDQVSLKPLDSSRKRKSRCRADGSRSVAETIAKWKEYNEHLYSGKDDGRSSCKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPDISDYASVKELFKDSSLAASSSCSSAATATSETTTISNQSEVCAAEDVKEKPRPVNVNYCHKAYESASPTSRMKQEPKDEAVDHMDPGTGEFQDVRPEGTHDAGQVSEDVNKDQMDFSWIDGCFDFNDDYLKSFSTDELFQVDELLGNIDNNPIDDSGLLQGLDFGQMGFPGDGNPQVEEMPSSFIYQLQNPDAKLLGSLPHMEQTPSGVDYGLDFLKTVEPGDYNGGGEDSRFLNLDDDLNHDSKGMQARKDD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02278 390 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Pumo9g02278 390 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Pumo9g02278 390 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Pumo9g02278 390 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Pumo9g02278 390 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Pumo9g02278 390 MobiDBLite consensus disorder prediction 11 26 - -
Pumo9g02278 390 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Pumo9g02278 390 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 347 - -
Pumo9g02278 390 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Pumo9g02278 390 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Pumo9g02278 390 MobiDBLite consensus disorder prediction 1 26 - -
Pumo9g02278 390 MobiDBLite consensus disorder prediction 45 75 - -
Pumo9g02278 390 MobiDBLite consensus disorder prediction 369 390 - -
Pumo9g02278 390 MobiDBLite consensus disorder prediction 357 390 - -
Pumo9g02278 390 FunFam Ethylene-responsive transcription factor 2 78 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02278 Pumo-Chr9 55944329 55946662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02278 16 374 AP2-EREBP Transcription Factor Family AT2G40340 39.891 1.81e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g02278 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02278 - K09286 gmx:100800134 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02278 9 55944329 55946662 Pumo9g02278 9 55944329 55946662 ECH