Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02273 ATGGAGGACAAGAACCTGACCTCAAAATGTTTTTTTTACCACAACCCAAGTCATTTTTTCCGGTTGTTTTTCTGTTTGTGGTTTCTTCTGGTCCCAGTGGTGAGTGAAGAGCGTTGGGATGGAGTGGTTGTGACACAGTCAAACTTCCTAGTACTTCAAGCATTCAAGCAAGAGTTGGTTGATCCTGAAGGCTTCCTGAGAAGCTGGAATGACAGTGGCTATGGAGCTTGCTCCGGAGGTTGGGTTGGTATCAAGTGTGCTCAGGGACAGGTTATTGTGATCCAGCTTCCATGGAAGGGGTTGAAGGGTCACATCACTGAGAGGATTGGCCAACTTAGGGGGCTTAGAAAGCTTAGCCTCCACGATAACCAAATTGGTGGTTCAATTCCTTCAGCACTGGGACTTCTTCTCAATCTTAGAGGAGTTCAACTCTTCAACAATAGGTTCACAGGGTCCATCCCTCCTTCATTAGGTTCCTGTCCTTTGCTTCAGTCTTTGGACCTCAGTAATAATTTGCTCACTGGGACAATCCCCATGAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACTTGAGCTTTAATTCCTTGTCTGGCCCAATACCAACTAGCCTAACTCGCTTACCTTCTCTCACCTACTTATCTCTTCAACACAATAATCTCTCGGGCTCTATTCCTAACTCATGGGGTGGTAGCTTGAGGAACCATTTTTTTCGCCTTCAAAATCTGATCCTAGATCATAACTTCTTGAGTGGAAGCATTCCTGCTTCTTTTGGCAACTTGAGTGAACTTACAGAGATTTCTCTTAGTCATAACCAGTTTAGTGGAGCTATCCCAAATGAAATAGGAAGCCTTTCTAGACTTAAGACAGTAGATTTTTCTAATAATGCCTTGAATGGAAGCTTGCCTGCCACTCTCTCTAATGTTTCCTCACTCACTCTCTTGAATGTAGAGAACAACCGCCTAGGCAATCAAATCCCAGAAGCTTTAGGCGGGTTGCACAATCTTTCTGTTCTAGTTCTGAGCAGAAACCAATTTAGTGGCCACATTCCTCAAAGTATTGGAAACCTTTCAAAGCTTACACAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGACAATCTGCGTAGTCTTAGTTTCTTCAACGTTTCTCATAACAACCTCTCTGGTCCAGTTCCAACCCTACTGGCCAAAAAATTTAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGGTATAGCCCTTCAACCCCATGTCCCCCCCTAGCTCCTTCTGGTTCACCTCCTGAAATATCAGAACACCAACATCATAAGAAACTAGGCACCAAAGACATAATTCTCATAGTAGCAGGAGTGCTCCTTGTAGTCCTGGTAACAATTTGCTGCATTCTGCTATTCTGCTTGATCAGCAAAAGAGCAACATCAAATGCAGAGGGTGGCCAGGCCACAGGGAGAGCATCTGCATCTGCTTCAAGGACAGAAAAAGGAGTCCCTCCTGTCGCAGGCGAAGCCGAAGCGGGTGGTGAGGCTGGAGGTAAACTAGTCCATTTTGATGGACCATTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGTACATATGGAACTGTGTACAAGGCTACATTAGAGGATGGAAGTCAAGCTGCAGTGAAACGATTGAGGGAAAAGATCACTAAAGGTCAGAAAGAATTCGAATCTGAAGTCAGTGTTATAGGAAGAATTCGACACCCAAATCTTTTGGCATTAAGAGCCTATTACTTAGGACCCAAAGGAGAAAAGCTTCTAGTATTTGATTACATGCCTAAAGGAAGTCTTGCTTCTTTCCTACATGCTCGTGGGCCAGAAACAGGCATTGATTGGCCAACAAGGATGAAAATAGCACAGGGAATGGCTCGTGGCTTGTTATACCTTCATTCCCAAGAGAACATTATACATGGGAACCTCACGTCCAGCAATGTGCTGCTGGATGAGAATACGAATGCTAAAATAGCTGATTTTGGACTTTCTCGGTTGATGACAACTGCTGCTAATTCTAACGTGATTGCCACTGCTGGAGCATTGGGATACCGAGCACCTGAGCTCTCGAAGCTTAAAAAAGCCAACACAAAAACTGATGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTATGAATGGCGTGGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAACGAGGTGTTCGATGTAGAGTTGATGAAAGATGCTTCAACATACGGCGACGAGATGCTAAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCAGCAAGTCCTTCAGCAGCTTGAAGAGATTAGACCAGAGATATCAGCCAGTTCGGGTGATGATTTAGCCATCCCTTCGACCAGTGAATGA 2484 0.4457 MEDKNLTSKCFFYHNPSHFFRLFFCLWFLLVPVVSEERWDGVVVTQSNFLVLQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLKGHITERIGQLRGLRKLSLHDNQIGGSIPSALGLLLNLRGVQLFNNRFTGSIPPSLGSCPLLQSLDLSNNLLTGTIPMSLGNATKLYWLNLSFNSLSGPIPTSLTRLPSLTYLSLQHNNLSGSIPNSWGGSLRNHFFRLQNLILDHNFLSGSIPASFGNLSELTEISLSHNQFSGAIPNEIGSLSRLKTVDFSNNALNGSLPATLSNVSSLTLLNVENNRLGNQIPEALGGLHNLSVLVLSRNQFSGHIPQSIGNLSKLTQLDLSLNNLSGEIPVSFDNLRSLSFFNVSHNNLSGPVPTLLAKKFNSSSFVGNIQLCGYSPSTPCPPLAPSGSPPEISEHQHHKKLGTKDIILIVAGVLLVVLVTICCILLFCLISKRATSNAEGGQATGRASASASRTEKGVPPVAGEAEAGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQKEFESEVSVIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPETGIDWPTRMKIAQGMARGLLYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMKDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPEISASSGDDLAIPSTSE 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02273 827 FunFam Pollen receptor-like kinase 1 614 818 - -
Pumo9g02273 827 SMART LRR_typ_2 333 356 IPR003591 -
Pumo9g02273 827 SMART LRR_typ_2 381 404 IPR003591 -
Pumo9g02273 827 SMART LRR_typ_2 112 136 IPR003591 -
Pumo9g02273 827 SMART LRR_typ_2 309 332 IPR003591 -
Pumo9g02273 827 SMART LRR_typ_2 357 380 IPR003591 -
Pumo9g02273 827 SMART LRR_typ_2 261 285 IPR003591 -
Pumo9g02273 827 SMART LRR_typ_2 208 231 IPR003591 -
Pumo9g02273 827 FunFam Leucine-rich repeat receptor protein kinase EMS1 158 237 - -
Pumo9g02273 827 Pfam Leucine rich repeat N-terminal domain 50 86 IPR013210 -
Pumo9g02273 827 SUPERFAMILY L domain-like 85 420 - -
Pumo9g02273 827 Gene3D Ribonuclease Inhibitor 201 301 IPR032675 -
Pumo9g02273 827 MobiDBLite consensus disorder prediction 485 514 - -
Pumo9g02273 827 Gene3D Transferase(Phosphotransferase) domain 1 615 820 - -
Pumo9g02273 827 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 308 426 - -
Pumo9g02273 827 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 240 808 - -
Pumo9g02273 827 FunFam Leucine-rich repeat receptor-like kinase 47 157 - -
Pumo9g02273 827 Pfam Protein tyrosine and serine/threonine kinase 540 805 IPR001245 GO:0004672|GO:0006468
Pumo9g02273 827 Gene3D Phosphorylase Kinase; domain 1 543 614 - -
Pumo9g02273 827 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 239 307 - -
Pumo9g02273 827 Pfam Leucine rich repeat 162 221 IPR001611 GO:0005515
Pumo9g02273 827 Pfam Leucine rich repeat 239 298 IPR001611 GO:0005515
Pumo9g02273 827 Pfam Leucine rich repeat 335 394 IPR001611 GO:0005515
Pumo9g02273 827 Gene3D Ribonuclease Inhibitor 302 427 IPR032675 -
Pumo9g02273 827 Gene3D Ribonuclease Inhibitor 47 200 IPR032675 -
Pumo9g02273 827 FunFam Leucine-rich repeat receptor-like protein kinase 522 613 - -
Pumo9g02273 827 PRINTS Leucine-rich repeat signature 357 370 - -
Pumo9g02273 827 PRINTS Leucine-rich repeat signature 163 176 - -
Pumo9g02273 827 CDD STKc_IRAK 543 808 - -
Pumo9g02273 827 ProSiteProfiles Protein kinase domain profile. 537 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g02273 827 SUPERFAMILY Protein kinase-like (PK-like) 541 809 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02273 Pumo-Chr9 55915285 55918820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02273 39 810 Receptor kinase-like Gene Family AT3G51740 64.570 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo9g02273 PK_Tyr_Ser-Thr 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02273 - - gmx:100811174 1450.26