Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02270 ATGCCTACTGCAGCCAAGAAGTACTTCTTAACGGTCTTCAATCCAGAGACACACTCTGAAAGGATGCTTATACCAAATGCTTTTGTGAAATCTACACCCTTACAAGGAAGGAGAAGAAGGAGGTTCCCTGAAGATGTCATCCTCAGAAATGTTGGTGGGAGAGTTTGGAATGTGAAGACATGTCTTGTTGGAAACCAAATTTACTTTGAAGAGGGTTGGAAGGTTTTTCAAGAAGAAAACTGTTTAGAAAAGGCAGATTTTCTAGTTTTTAAGTATGATGGGGCCAATGGATTCAAGGTTGTGATTCTTGAACAATCATCACAGTGTGAAAGGACAGAAGCTGAAGAAGATGAGGTGATAGAGATTACAGATGATCAAGAACATGAAGCAGCTGAGGATGAAGATGATGAGTATAGAGACATGGAAGAAGAGAGTGAAAAAGAACATAGTGCTGAATACATCAGGAGTCAAACTCATCCTCGTAGAGCCTGCAAAAGTAACCTTTACCTGATGATTGATTTATCTGGTGGTTTAGGGGAGAGTGCATCAAGTTCCACTCCTACGGTTGAAGGTCCTAATCTTGAAGACTAG 591 0.4061 MPTAAKKYFLTVFNPETHSERMLIPNAFVKSTPLQGRRRRRFPEDVILRNVGGRVWNVKTCLVGNQIYFEEGWKVFQEENCLEKADFLVFKYDGANGFKVVILEQSSQCERTEAEEDEVIEITDDQEHEAAEDEDDEYRDMEEESEKEHSAEYIRSQTHPRRACKSNLYLMIDLSGGLGESASSSTPTVEGPNLED 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02270 196 MobiDBLite consensus disorder prediction 176 196 - -
Pumo9g02270 196 MobiDBLite consensus disorder prediction 121 159 - -
Pumo9g02270 196 SUPERFAMILY DNA-binding pseudobarrel domain 6 105 IPR015300 -
Pumo9g02270 196 Pfam B3 DNA binding domain 9 103 IPR003340 GO:0003677
Pumo9g02270 196 Coils Coil 128 148 - -
Pumo9g02270 196 ProSiteProfiles B3 DNA-binding domain profile. 7 106 IPR003340 GO:0003677
Pumo9g02270 196 MobiDBLite consensus disorder prediction 121 142 - -
Pumo9g02270 196 PANTHER B3 DOMAIN-CONTAINING 6 148 - -
Pumo9g02270 196 SMART B3_2 9 106 IPR003340 GO:0003677
Pumo9g02270 196 Gene3D - 1 109 IPR015300 -
Pumo9g02270 196 CDD B3_DNA 7 103 IPR003340 GO:0003677
Pumo9g02270 196 MobiDBLite consensus disorder prediction 143 159 - -
Pumo9g02270 196 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02270 Pumo-Chr9 55908756 55909699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02270 9 135 B3 DNA Binding Superfamily AT4G34400 34.646 1.64e-17 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo9g02270 B3 1.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02270 - - gmx:100810634 224.557