Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02218 ATGATTTCCCAGTTGATTTTAAATGGCTTCTTTTTTTCCCACCACGCCATGCTTCCAAAACCCCTTTCACAACAAACCCCATCTTCCGTTTCCCTCAAAGTTCGATGCTTTCGCGCTTCTGAACCCACCCCTGTTCCCTCTTCTTCTCATTTGAGTTCCACTCTCTCGTCACGTGCGCCCAAACGTGTCTCTCGGCTCTTGAGGACTGAAGTTCAACACGCTCTAATGGATTACCTGCATTTCACGCGCGGCTACACCTTCTCCGACGCCGAGTACATCAGCAATAACTCACCACGTTTTGTTGAATCATTGGTATCAACGATCGACGACAAAGACGACGACGTTCCTCGATCGGTGAGAAAATTCCTCAGGTACAACCCCATCAACGAGTTTGAACCGTTTTTCGAGAGTTTGGGAATTGACCCTTCTGAGTTGCATCTGTTTCTCCCTCCTGGCATGATTTTCCTGGCTGATGATCATGTGTTGCTTGAAAATTTTCATGCTTTGTGTAACTATGGGGTGCCAAGGAATAGAATGGGAAAGTTTTATAAAGAGGCAAAAGAGATTTTTGGCTATGCTAGTGGGGTGTTGTTGTCAAAGTTAGAAGCTTATGAGAATTTGGGTTTGAGTAGATCAACTATTGTCAAGCTTGTTGTTTGTTGCCCTTTGCTTTTGGTTGGTGATGTCAATTGTGAATTTGTTGCTGTGCTTGGTTGGTTGAAGAGAATTGGGATTGAAAGTGATTGGATGATGAATTACTTGTCTTGTTCAAGGACATATAGTTGGAAAAGAATGCTTGATACCATGCAGTTTCTTCATAAAGTGGGTTATTCTGAGGAACAAATGCACAATTTGTTTAGGGAAAATCCTAAGTTGTTGTTGGAGGGTTTTGGGAGGAAGGTGTACTTAGTTTTTGGTAGATTGCTTAAAGTGGGTGTTGAGTTGAATGTGATTTATTCTTATTTTGTAGAGTATCCCAATATCTTGTCAAACAAGTGTGTGAAAAATTTGTTGAGAGTGATTGGCTTTTTGTGTGCTATTGGATTGGAAAAAGATGATATTACACACATTTTGTCTAAGTACATGCATCTCTTGAGTACACGATCCTTGAAAGGTCATAAAACTGTTTGTCAGGAGTTAAAAGTTGGAAAAGCTGATCTGTGCCAAATCATAAAGGATGATCCATTGAAGCTAATTAGTTTGGCATCAAAACAGGAAAATAAGGTTGATGAAAAGGTAGATAGTCATGACCCACGTAATTATTTGGAAAAGACAACTTTCTTGCTGAAATTGGGATACACTGAGAACTCTGAAGAGATGGCAAAAGCATTAAAAATGTTCCGAGGGAGAGGTGATCAATTACAAGAGAGGTTTGATTGCCTGGTAGAAGCCGGTTTGGACTATAATAGTGTGATTGAAATGATAAAACGAGCTCCTATGATTCTAAGCCAGAACAAAGCTGTAATTAAAAAGAAGATTGATTTCTTAAGAAATGTTTTAGGTTACCCACTGGAATGTCTCGTGGCATTCCCAACATACTTTTGCCATGATTTGGACAAAATTGTTGAAAGACTTTCAATGTATGCGTGGCTGAAAGAGAGGAATGCAGTAAACCCTACGTTAACCCTGAGTACCATAATTGCATCCAATGATAAACGCTTTGTAAAGTACTTTGTGAATGTGCATCCTCAAGGTCCAGCCGTCTGGAAGGGTTTAAAAAGGTTATCAAATAAAGATAAGAACAAATAA 1749 0.3974 MISQLILNGFFFSHHAMLPKPLSQQTPSSVSLKVRCFRASEPTPVPSSSHLSSTLSSRAPKRVSRLLRTEVQHALMDYLHFTRGYTFSDAEYISNNSPRFVESLVSTIDDKDDDVPRSVRKFLRYNPINEFEPFFESLGIDPSELHLFLPPGMIFLADDHVLLENFHALCNYGVPRNRMGKFYKEAKEIFGYASGVLLSKLEAYENLGLSRSTIVKLVVCCPLLLVGDVNCEFVAVLGWLKRIGIESDWMMNYLSCSRTYSWKRMLDTMQFLHKVGYSEEQMHNLFRENPKLLLEGFGRKVYLVFGRLLKVGVELNVIYSYFVEYPNILSNKCVKNLLRVIGFLCAIGLEKDDITHILSKYMHLLSTRSLKGHKTVCQELKVGKADLCQIIKDDPLKLISLASKQENKVDEKVDSHDPRNYLEKTTFLLKLGYTENSEEMAKALKMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPMILSQNKAVIKKKIDFLRNVLGYPLECLVAFPTYFCHDLDKIVERLSMYAWLKERNAVNPTLTLSTIIASNDKRFVKYFVNVHPQGPAVWKGLKRLSNKDKNK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02218 582 PANTHER CGI-12 PROTEIN-RELATED 73 294 IPR003690 GO:0003690|GO:0006355
Pumo9g02218 582 FunFam mTERF family protein 108 259 - -
Pumo9g02218 582 Pfam mTERF 269 414 IPR003690 GO:0003690|GO:0006355
Pumo9g02218 582 Pfam mTERF 445 554 IPR003690 GO:0003690|GO:0006355
Pumo9g02218 582 Gene3D Transcription termination factor 3, mitochondrial 301 570 IPR038538 -
Pumo9g02218 582 Gene3D Transcription termination factor 3, mitochondrial 114 300 IPR038538 -
Pumo9g02218 582 SMART mt_12 180 210 IPR003690 GO:0003690|GO:0006355
Pumo9g02218 582 SMART mt_12 504 537 IPR003690 GO:0003690|GO:0006355
Pumo9g02218 582 SMART mt_12 320 350 IPR003690 GO:0003690|GO:0006355
Pumo9g02218 582 SMART mt_12 472 503 IPR003690 GO:0003690|GO:0006355
Pumo9g02218 582 SMART mt_12 215 246 IPR003690 GO:0003690|GO:0006355
Pumo9g02218 582 SMART mt_12 437 467 IPR003690 GO:0003690|GO:0006355
Pumo9g02218 582 FunFam Transcription termination factor MTEF18, mitochondrial 304 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02218 Pumo-Chr9 55042576 55045027 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo9g02218 mTERF 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02218 - - gmx:100803162 1020.76