Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02211 ATGGAAAACTCAGACACCGACGAACCCGAGAAGAAGAGGCCTCATCTCACCTCTGTTTCTTCCCGCACGCCTCGAAACTCCATCAACTCTCCTACCACCAACAAAACGGCTGATGCAGGAGTCTTACAGTTCCAGAATCAGCAGCTTGTTCAACAGATAGACATCCAAAAACATGCTTTGCATGATCTCGAAGAAAAAATTAGAGAATTGAAAGGAAAGCAAAGTTCTTATGACGACTTGTTAATTGCATTGAACCAACTCTGGATTCAGTTGGTTGACGATATGATTCTTCTTGGAATACGAGCTGGGAGAGGCAAAGGCAAAGACACATTGCAACATTTGACTGGCATTGATAATCCTCAAGGTTCACTTACTTTGTGTCCTGCTGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCTATTAAAGGAATCAGTGATGATGAGATCATTAGTTATGTTGAGGAGGCCCTTGCTTTGCGTCAGTCTTCTACAAGGAAGTTGTTGAAACTTCTGAAAGATACCATTGCTGATCAGATGGAAAGAGCAGGCAGTATAGCTCAGGTTTTGCATGGAGATTTATCTTCAGAAGATGCTATAATTCAAATGTCTAAGATTGATGATATGACGAAAGAAGAGGCAGATAATTTACGTGAAGTGATTGATACTCTCCATGCGAAACATAAAGAGTATACTGTCGCTATTCAAAATTCTATCAATGAGTGCTCACAAGATCAATCTGAGATTAAACACCTTGCAGGTGAGCTTGATGAGATTGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAGGATGCAGCAATAGGGATGAATTCCCCCAATGCAGATGCAGTGAATGGAAACCTGTCTCCTGAAATCATTGCAGACAGGACCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCACAGGAAGACAATCAGACCTTGACAAAGCAGTTCCAAGATCTTCAGAATGAACTGAAAGATGATAAGTATGTACGCTCTTCTCGAATATACTCTTTGGCTAATGATCAACTTCAACATTGGATGACTGAATTGGCCCGATATAAAACATCAGTAGAATCTCTACAGGCTGGCAGTGTTCATGTTGCAAAATGGGAGAATGAACTAAATTTGAAATTGGAGTCTGCTGATAGTGCAAGGCAGATCCTTGACAATTGTGACCATAGGATTGATGAACTAGAGCTTCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAAATGGAAGAAGCTAAACAGGATACTGGGAGAAAAGATATCAAATCGGAGTTTCATGTTATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGAAGGTCAGTTAAAGCGATGGAAAGATGCAGCTCATGAGGCTGTATCATTACGTGAGAAAGCACATTCACTAAGAGAAGCATTGAGCATGAAGACAAGTGAACTTAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATCAAGTCTTTAAAAACATTGACTGAAAAGTTACAGAAGGAGAATCAGGAATTAGAGTTTGTTCTGGATATGCATGGCCAGGAGAATTATGATAAAAGATATTCAGAAGTAAGAGAATCTGAAAGTAAAGCTCACTCTCAAGCTGAAATACTGAAAAATGCTTTAGACGAGCATAGCCTAGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCTGCAGAAGCTGAAATAGAGGACTTGAGGGCCAAACTGGATGCATCTGAGAGGGATATTTTGGAGCTGACTGAGGCTGTTAAAGTTAAAGATGCTGAGGCAGACACATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAAAATCTGTTGGACCAGGTGATCGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGCGTGAAGACAAAACAGGCGCACAACACTCTACTGTCCCAGAAGCATGCCTTAGCTAAGCAACTTCAACAAATTAATACTTCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGATGAAAGCTATTCTATCCGACGCCATTAAATGTAATCAAGAAGAAAAACACCTTGCAGTTACGCTGGAATTCGCAAAGTGGGAAGTGGCTGATGCTGAGAAGGAATTGAAGTTGCTCAAGTCTGCTGTTTCCTCTTCAGAGAAAGAACACGATCAAATTCAGAAAGATACAGAAGCTATTGAAGTGGAATTGGAGAGTGAAAGGAGTTTACGGAAGAAGCTTGAGGAAGAATTAAGGGAATTGAACAGCAAAATTGCTGAGCTGACTTCTGAAACTGGAGAGACCACAATACAAAAACTCGAAAAAGAAATAAGGATTTGCAAGAACATGATCAAGTGTACTGTCTGTACTGATCGTCCGAAGGAGGTTGTGATAGTCAAGTGCTATCATCTGTTTTGCAATCCATGCATTCAGAGAAATCTAGAGCTTCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGTAAAAATATGA 2646 0.3995 MENSDTDEPEKKRPHLTSVSSRTPRNSINSPTTNKTADAGVLQFQNQQLVQQIDIQKHALHDLEEKIRELKGKQSSYDDLLIALNQLWIQLVDDMILLGIRAGRGKGKDTLQHLTGIDNPQGSLTLCPAEDIFLCRLIQKDSIKGISDDEIISYVEEALALRQSSTRKLLKLLKDTIADQMERAGSIAQVLHGDLSSEDAIIQMSKIDDMTKEEADNLREVIDTLHAKHKEYTVAIQNSINECSQDQSEIKHLAGELDEIVAELEESRRKLVNLEMQKDAAIGMNSPNADAVNGNLSPEIIADRTMGLRELKDSIEEAKIVDADRLSELQDAQEDNQTLTKQFQDLQNELKDDKYVRSSRIYSLANDQLQHWMTELARYKTSVESLQAGSVHVAKWENELNLKLESADSARQILDNCDHRIDELELQLQKCIIEKNDLEIKMEEAKQDTGRKDIKSEFHVMASALSKEMGMMEGQLKRWKDAAHEAVSLREKAHSLREALSMKTSELKSLANKCAEQVLEIKSLKTLTEKLQKENQELEFVLDMHGQENYDKRYSEVRESESKAHSQAEILKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRAKLDASERDILELTEAVKVKDAEADTYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKTKQAHNTLLSQKHALAKQLQQINTSIENSKTRITHSEEQMKAILSDAIKCNQEEKHLAVTLEFAKWEVADAEKELKLLKSAVSSSEKEHDQIQKDTEAIEVELESERSLRKKLEEELRELNSKIAELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02211 881 Coils Coil 640 660 - -
Pumo9g02211 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 880 IPR013083 -
Pumo9g02211 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Pumo9g02211 881 MobiDBLite consensus disorder prediction 1 17 - -
Pumo9g02211 881 SUPERFAMILY RING/U-box 828 872 - -
Pumo9g02211 881 Pfam Zinc finger, C3HC4 type (RING finger) 828 870 - -
Pumo9g02211 881 Coils Coil 250 284 - -
Pumo9g02211 881 CDD RING-HC_Bre1-like 821 877 - -
Pumo9g02211 881 SMART ring_2 829 867 IPR001841 -
Pumo9g02211 881 SUPERFAMILY Tropomyosin 683 829 - -
Pumo9g02211 881 Coils Coil 584 625 - -
Pumo9g02211 881 Coils Coil 407 448 - -
Pumo9g02211 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Pumo9g02211 881 MobiDBLite consensus disorder prediction 19 35 - -
Pumo9g02211 881 Coils Coil 46 80 - -
Pumo9g02211 881 PANTHER RING FINGER PROTEIN-RELATED 7 881 IPR013956 GO:0004842|GO:0010390
Pumo9g02211 881 Coils Coil 521 544 - -
Pumo9g02211 881 Coils Coil 329 349 - -
Pumo9g02211 881 Coils Coil 738 807 - -
Pumo9g02211 881 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02211 Pumo-Chr9 55004167 55014060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02211 829 876 RAD5 or RAD16-like Gene Family AT5G05130 35.417 5.60e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02211 K10696 - gmx:100796610 1591.25