Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02210 ATGCGCCGAGGGAGAGCCACCGCCGCCGCCGCCGCAGCCGTTGTGGATCCGACGGCGGAGCAGGGCCCTCCGGCGAAGGAGACGCGGTTCCGCGGCGTGAGGAAGCGGCCGTGGGGGCGATTCGCGGCGGAGATTCGAGATCCGTGGAAGAAGCAGCGCGTGTGGCTGGGGACGTTCGATTCCGCCGAGGACGCCGCGCGGGCCTACGACGCCGCGGCCCGATCCTTCCGCGGGCCCAAAGCGAAGACCAATTTCCCCTTTCCGAGCCCCGAGGCGGACCAGATTTCGCTCTACCACCAGGGCCACGGGCTCTCGAAGTTCGAGCAGGTCCAGGTGAACCGGCCCACGACGAGCGGGATGAGCAGCACGGTGGAGTCCTTCAGCGGGCCTAGGGTTCCGTCCTCGTCCACTCTCCACCCTCGCAAGCCCGTTGTGGTTAACCCTATCATCCCTCTCGACGACGATTGCCACAGCGACTGCGACTCTTCTTCCTCCGTCGTCGATGACGAGGACTGCGTCCTCACCTCCTCCTTCCGGCAACCGCTGCCCTTCGATCTAAACCTTCCGCCGCCCGACGCCGCCAACGATGACGACCTCCCCGCCACCGCACTGTGCCTCTGA 621 0.6731 MRRGRATAAAAAAVVDPTAEQGPPAKETRFRGVRKRPWGRFAAEIRDPWKKQRVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPFPSPEADQISLYHQGHGLSKFEQVQVNRPTTSGMSSTVESFSGPRVPSSSTLHPRKPVVVNPIIPLDDDCHSDCDSSSSVVDDEDCVLTSSFRQPLPFDLNLPPPDAANDDDLPATALCL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02210 206 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Pumo9g02210 206 MobiDBLite consensus disorder prediction 116 135 - -
Pumo9g02210 206 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Pumo9g02210 206 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Pumo9g02210 206 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Pumo9g02210 206 MobiDBLite consensus disorder prediction 1 29 - -
Pumo9g02210 206 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Pumo9g02210 206 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Pumo9g02210 206 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pumo9g02210 206 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Pumo9g02210 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 173 - -
Pumo9g02210 206 MobiDBLite consensus disorder prediction 116 140 - -
Pumo9g02210 206 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02210 Pumo-Chr9 54998304 54999537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02210 1 206 AP2-EREBP Transcription Factor Family AT1G50640 49.351 5.93e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g02210 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02210 K09286 - gmx:100795557 255.373