Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02209 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTACACCATCTGGTGACAACATTGAAGGTGGTGCAGATTTTTCTGAAGCAATTCGACGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATACCCAGATCGACCCGGTGAACCTGACTGCTTATATTATTTGAGGACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGATACTCATTATGGTGAAGAACTCCCTCAGAGGGCTGGGCAACCTGATTGCGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCGACATGTAAATATCATCATCCAAAGGACAGGCGGGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCACCCACAGCATGCTTCCCTTGGAGCATACCCCTTGGCTGGATCTCCTACCTCAACAATGATTCCCACATCAGGTTTACCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGCCTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCACAAGGCATTATACCTGTGCAGAGCTGGAACAATTACATGGGAAATATGAACCCTGCAATGCCTACCGGTTTTCTTGGGTCTAATCTTGTTTATGACTTCATGAATCTGGGCGAGTCACTTTTTGGTGGGCAGGCAATAAATTCAGCTCTCCCCAATAGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGGCTTCCTGTGAGACCTGGGCAGGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACCATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGTCTGTACTTGATACTCCTCTCATTAGTAATCCTAGAGGGTTATCAACTGTACAACCACCTGAGACATCTCCTTCTAAACCATCAAGTGACAACAAGCTTCAGCATTCTGATGCAAAAGCTGCTACAGAAGATTCATCCAAACAAGCAGATACTACATCAAATTCCTTCCCAGCCTCCTCAGAGCCTTTACACGACTAA 1281 0.4395 MPENRQVLRNADSTPSGDNIEGGADFSEAIRRLKINDNWDRDAAAQSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIDTHYGEELPQRAGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTSTMIPTSGLPYAGGFPAWSAVPRMSYLSGQGLQSYVPPFLSSSQGIIPVQSWNNYMGNMNPAMPTGFLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMSVLDTPLISNPRGLSTVQPPETSPSKPSSDNKLQHSDAKAATEDSSKQADTTSNSFPASSEPLHD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02209 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 346 IPR000571 GO:0046872
Pumo9g02209 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 304 IPR000571 GO:0046872
Pumo9g02209 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872
Pumo9g02209 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Pumo9g02209 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 167 IPR000571 GO:0046872
Pumo9g02209 426 SUPERFAMILY CCCH zinc finger 100 124 IPR036855 GO:0046872
Pumo9g02209 426 PANTHER PROTEIN PHOSPHATASE RELATED 39 380 - -
Pumo9g02209 426 SUPERFAMILY CCCH zinc finger 318 346 IPR036855 GO:0046872
Pumo9g02209 426 SUPERFAMILY CCCH zinc finger 58 80 IPR036855 GO:0046872
Pumo9g02209 426 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Pumo9g02209 426 Gene3D - 271 349 - -
Pumo9g02209 426 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Pumo9g02209 426 MobiDBLite consensus disorder prediction 365 392 - -
Pumo9g02209 426 SUPERFAMILY CCCH zinc finger 139 168 IPR036855 GO:0046872
Pumo9g02209 426 MobiDBLite consensus disorder prediction 365 426 - -
Pumo9g02209 426 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Pumo9g02209 426 MobiDBLite consensus disorder prediction 406 426 - -
Pumo9g02209 426 SUPERFAMILY CCCH zinc finger 281 306 IPR036855 GO:0046872
Pumo9g02209 426 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Pumo9g02209 426 Gene3D - 52 128 - -
Pumo9g02209 426 Gene3D - 129 174 - -
Pumo9g02209 426 MobiDBLite consensus disorder prediction 1 25 - -
Pumo9g02209 426 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872
Pumo9g02209 426 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Pumo9g02209 426 SMART c3hfinal6 320 347 IPR000571 GO:0046872
Pumo9g02209 426 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Pumo9g02209 426 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Pumo9g02209 426 SMART c3hfinal6 277 304 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02209 Pumo-Chr9 54987630 54992089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02209 1 408 C3H Transcription Factor Family AT1G04990 47.743 3.18e-117 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo9g02209 zf-CCCH 4.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02209 - - vra:106765262 873.233