Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02207 ATGCTGCAAGCGTATCCGTCACGTGGAGTTCTCTCACCCTCACATCACTACAGTCGTGGGCCCCACTGTCTTTCTCCCTCCCTCAAATCTCAAAGAGGAAGCCAGCATACCCACACGCTCTGTCCCTCTCTCTCTCTCTTTCACCAAAATCCCAAACCCGAAGCGAAGCAAAAACCACCTTCACAGCTTCACAGCCACAACCTCATGGAAGAGCTCTCCGCGGGGCCTCTCGTCCCCGCCGTCGTCAAGCCCGATGCCTCCAAAGCCGCCACCGCCACCGCCGCCGACACCGACGCCTCCGCCGCGGCCTCTGGCGACACGTTCCCGGCCTCCACCTCGGAGCCCGACAAGGACTTCCTGTGTCCGATTTGCATGCAGATCATCAAGGACGCGTTCCTCACCACGTGCGGCCACAGCTTCTGCTACATGTGCATCATCACGCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCGGCCACTACCTCACCAACACCAACTTGTTCCCTAACATTTTGCTCGACAAGCTACTGAAGAAGACTTCTGCGCGTCAAATATCAAAAACCGCTTCACCTGTGGAACATTTCCAGCAGACATTGCAAAAGGGTTGTGATGTGTCAATTAAGGAGCTTGACACCCTTTTGTCACTTCTTACCGAGAAGAAAAGAAAAATGGAACAAGAAGAAGCTGAGAGAAATATGCAAATATTGTTAGACTTCTTGCATTGCTTACGCAAGCAAAAAGTTGACGAGTTGAAGGAGGTACAAACTGATCTCCAGTTTATAAAAGAGGACATTAATTCTGTGGAGAAACATAGAATGGACTTGTATCGTGCACGGGACAGGTACTCTGTAAAATTGCGGATGCTTGATGATTCTGGTGGAAGAAAATCATGGCAGTCATCAATGGACAAGAACAGCAGTGGCCTTATATCTAGTCCTCTAAATCTTCGAGGAGGTTTGTCATCAGGGAGCCATACTAAGAAAAATGATGGAAAGTCTCAAATTAGCTCTCACGGGCATGGAGTTCAGAGAAGGGATGCCATCACTGGATCCGATTCACAATATGTAAATCAATCGGGTCTTGCTCTAGTTAGAAAGAAGAGGGTGCATACACAGTTCAATGACCTACAAGAATGTTACCTACAAAAGCGACGACATGCAGCTGATAGGCCCCATAGCCTACAAGAAAGAGATATGAATCTCATAAGTCGAGAAGGTTATGGTGCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTACAGTCGATTGAGAGTCATTGCGGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGCATAGAGTTTGACCGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCTGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATACGCTAAGAACCAAATAGCTAGTAGTGATTATGAAGGAATTGTGACTGTTTGGGATGTAACCACTCGGAAGAGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTTGATTTTTCAAGAACAGATCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGGTACTCTGA 1683 0.4682 MLQAYPSRGVLSPSHHYSRGPHCLSPSLKSQRGSQHTHTLCPSLSLFHQNPKPEAKQKPPSQLHSHNLMEELSAGPLVPAVVKPDASKAATATAADTDASAAASGDTFPASTSEPDKDFLCPICMQIIKDAFLTTCGHSFCYMCIITHLRNKSDCPCCGHYLTNTNLFPNILLDKLLKKTSARQISKTASPVEHFQQTLQKGCDVSIKELDTLLSLLTEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEVQTDLQFIKEDINSVEKHRMDLYRARDRYSVKLRMLDDSGGRKSWQSSMDKNSSGLISSPLNLRGGLSSGSHTKKNDGKSQISSHGHGVQRRDAITGSDSQYVNQSGLALVRKKRVHTQFNDLQECYLQKRRHAADRPHSLQERDMNLISREGYGAGLEDFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCPVVEMSTRSKLSCLSWNKYAKNQIASSDYEGIVTVWDVTTRKSLMEYEEHEKRAWSVDFSRTDPSMLVSGSDDCKVL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02207 560 SMART WD40_4 481 520 IPR001680 GO:0005515
Pumo9g02207 560 SMART WD40_4 523 558 IPR001680 GO:0005515
Pumo9g02207 560 SMART WD40_4 426 470 IPR001680 GO:0005515
Pumo9g02207 560 SUPERFAMILY RING/U-box 107 177 - -
Pumo9g02207 560 MobiDBLite consensus disorder prediction 294 340 - -
Pumo9g02207 560 Coils Coil 207 230 - -
Pumo9g02207 560 MobiDBLite consensus disorder prediction 93 111 - -
Pumo9g02207 560 ProSiteProfiles Zinc finger RING-type profile. 121 158 IPR001841 -
Pumo9g02207 560 SMART ring_2 121 158 IPR001841 -
Pumo9g02207 560 Gene3D - 412 560 IPR015943 GO:0005515
Pumo9g02207 560 PANTHER E3 UBIQUITIN-PROTEIN LIGASE COP1 88 559 IPR042755 GO:0061630
Pumo9g02207 560 MobiDBLite consensus disorder prediction 1 36 - -
Pumo9g02207 560 MobiDBLite consensus disorder prediction 93 113 - -
Pumo9g02207 560 CDD RING-HC_COP1 117 163 - -
Pumo9g02207 560 SUPERFAMILY WD40 repeat-like 442 559 IPR036322 GO:0005515
Pumo9g02207 560 Coils Coil 244 271 - -
Pumo9g02207 560 Pfam Zinc finger, C3HC4 type (RING finger) 121 158 - -
Pumo9g02207 560 ProSitePatterns Zinc finger RING-type signature. 136 145 IPR017907 -
Pumo9g02207 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 211 IPR013083 -
Pumo9g02207 560 MobiDBLite consensus disorder prediction 292 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02207 Pumo-Chr9 54930851 54939042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02207 117 168 RAD5 or RAD16-like Gene Family AT5G05130 41.509 3.29e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02207 K10143 - gmx:100788171 931.398