Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02164 ATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTCAGTAACAACTCTGGTGCCCAAATGCGCAGCAATGATAGAAGGGTACCTGTCACTAGCAATAGCATCGCTCAGGAACATCACTACAGCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCCCGTCTCTTGTCCTCTTACCTCAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCCAAATGTGAATCCTTCAATGCATCATCAGGAAGGACAGGAAGTGGTTCAATAGGTGAAGATCCAGCTCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTATGAGCAAGAGCTTACAAAACCCTTTAAAGAAGCCATGCTTTTCTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCTTCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGATTCTCAAGCTGAAGACCGGGAACTCAAAGTCCAGCTTTTGCGCAAGTATAGTGGATATCTAGGGAGCCTCAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTCGGCAACAGCTACTTGATTGGTGGAACAGGCATTATAAGTGGCCTTATCCTTCGGAATCTCAAAAGCAGGCACTAGCAGAATCCACAGGCCTAGATCTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCCTCTGAGGATATGCAATTTGCCGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCCATGGATGGCATGCCTATGCTTCTTTAA 915 0.4448 MDMMNMETNRKFLSLPLSNNSGAQMRSNDRRVPVTSNSIAQEHHYSHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESFNASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDSQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02164 304 SUPERFAMILY Homeodomain-like 210 282 IPR009057 -
Pumo9g02164 304 ProSiteProfiles 'Homeobox' domain profile. 208 271 IPR001356 GO:0003677
Pumo9g02164 304 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 278 - -
Pumo9g02164 304 SMART HOX_1 210 275 IPR001356 GO:0003677
Pumo9g02164 304 CDD homeodomain 220 272 IPR001356 GO:0003677
Pumo9g02164 304 ProSitePatterns 'Homeobox' domain signature. 246 269 IPR017970 GO:0000981|GO:0006355
Pumo9g02164 304 Gene3D - 206 279 - -
Pumo9g02164 304 SMART KNOX2_2 107 158 IPR005541 GO:0003677|GO:0005634
Pumo9g02164 304 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Pumo9g02164 304 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Pumo9g02164 304 SMART ELK_2 188 209 IPR005539 GO:0003677
Pumo9g02164 304 Pfam ELK domain 188 209 IPR005539 GO:0003677
Pumo9g02164 304 Pfam Homeobox KN domain 228 267 IPR008422 GO:0003677|GO:0006355
Pumo9g02164 304 ProSiteProfiles ELK domain profile. 188 208 IPR005539 GO:0003677
Pumo9g02164 304 Pfam KNOX2 domain 110 156 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02164 Pumo-Chr9 53091559 53094974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02164 56 298 Homeobox Transcription Factor Family AT1G62360 68.872 1.31e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo9g02164 KNOX2 4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02164 - - gmx:100791704 566.614