Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02131 ATGGTTTCCTTTAAAAATTATTTTATTTATAAAAGAACAGAGAATCCATTGCATATCCTCAAATTTCGTAGCATCTTCTTTTTCTCACTGGATGCTACAAGTTGGCAAACATATGGTACCTTGAGATATTGTCATTCTGGGTTAGAACTGGGTAAAAATCCGAAATTGACACCAAAGGAGAAGCCAAACAGGGTGGGGCTTTTCTGGGACATGGACAATAAACCACCCAACTCAATCCCACCTTATGAAGTTGCCAATAAGCTGAGAATAGCTGCATCCTCTTTTGGAGTTGTTCGTTATATGGTGGCTTATGCAAATAGCCACACTTTTAGCCATGTCCCTCAATGTGTTCGGGAGAGTAGGAAAGAGAAGGAACTGTTGTATCGTTTAGAGAATAAGGGTGTCATCAAGCCAAATCAACCTTATCGTTGTAAGGTTTGTGGGAGAAAGTTTTATACTAATGACAAGCTTGTTAACCATTTCAAGCAACTGCATGAGTGTGAGCACGTGAAAAGGATGAACCAGATAGAGTCTGCTAGGGGGAGCAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGATATTCTCACTCCCAAAGTGGGGTATGGTTTGGCGGATGAGCTCAAACGGGCTGGGTTTTGGGTTCGAACTGTGTTGGATAAGGCACAAGCTGCAGATCGAGCATTGCAAAGCCACATGGTGGATATCATGGATCATAAGCGGGTTGAGTGTGTGGTCCTTGTGTCTGATGATTCCGATTTTGTTGATGTGATAAAGGAAGCAAAGATGCAATATCTGAAGACGGTTGTCATTGGGGATATTGATGATGGTTTCTTGAAGAGGACTGCTGATACTGCTTTTTCTTGGGAGGAAATTCTGATGGGGAAAGCTAAAAAGCAGGCTGTTTCGGTTGTGAAAAACTGGAAGGATCGTGATATCTTAAAAAGGTTGGAGTGGACATACAACCCTGATGAGGATAAAAATAATTTCAATCTGGATGATACCTTTACTGAAGCATCTGTAGATGATAATATTGAAGCATCTGTAGATGATAATATTGAAGATACCTGTGATGAAGTTGATGATGCCTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGATGATGATGTCACAAATGGACAGTCAGGCAAATTATCTGGTTTATCTGTGAATTGGTGA 1218 0.4072 MVSFKNYFIYKRTENPLHILKFRSIFFFSLDATSWQTYGTLRYCHSGLELGKNPKLTPKEKPNRVGLFWDMDNKPPNSIPPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPQCVRESRKEKELLYRLENKGVIKPNQPYRCKVCGRKFYTNDKLVNHFKQLHECEHVKRMNQIESARGSRRVKLVAKYSMKMEKYKKAASDILTPKVGYGLADELKRAGFWVRTVLDKAQAADRALQSHMVDIMDHKRVECVVLVSDDSDFVDVIKEAKMQYLKTVVIGDIDDGFLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILKRLEWTYNPDEDKNNFNLDDTFTEASVDDNIEASVDDNIEDTCDEVDDAYKDDRGSWWELDSDDDVTNGQSGKLSGLSVNW 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02131 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Pumo9g02131 405 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 55 391 - -
Pumo9g02131 405 SMART c2h2final6 142 165 IPR013087 -
Pumo9g02131 405 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Pumo9g02131 405 Pfam NYN domain 214 282 IPR021139 GO:0004540
Pumo9g02131 405 CDD PIN_LabA-like 152 283 - -
Pumo9g02131 405 SUPERFAMILY beta-beta-alpha zinc fingers 138 166 IPR036236 -
Pumo9g02131 405 Gene3D - 56 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02131 Pumo-Chr9 52552217 52554380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02131 56 395 C2H2 Transcription Factor Family AT4G12240 57.647 4.45e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo9g02131 NYN 2.8e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02131 - - gmx:100785257 716.457