Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02124 ATGGAAGATAAACTAGCAACAAGTGAAGGACAACCCATAAGATGCAAAGCTGCGATTTGCCGCAAGCCAGGTTCTCCATTGAGTATTGAGGAGATCATTGTGGCATCGCCAATGCCTCGTGAAGCCCGGATTCGTGTTATATGTAGTTCTCTTTGTCACAGCGATGTTACTTTTTGGAAGATGGAGGTTCCTCCTGCAATTTGTCCAAGAATCTTGGGTCATGAGGCTGTTGGGGTTGTGGAAAGCGTAGGAGAGGATGTAACTGAAGTTGCAAAAGGAGATGTGGTTGTCCCAATTTTCATACCTGATTGTGGGGAGTGTGTAGATTGCAAATCAAGCAAGAGCAACCTTTGTTCAAAGTTTCCATTCGAGGTGTCTCCTTGGATGCCTAGACATGCCACTTCTAGATTCACGGATTTAAAAGGAGAGATCATACACCATTTCTTGTTTGTGTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCCATCTGACCAAGATTGATCCAACAATACCTCCCAACAGGGCATGCCTACTTAGCTGTGGTGTATCAACCGGGGTAGGTGCTGCTTGGAGAACAGCAGGGGTGGAGCCAGGGTCTACAGTAGCTATTTTTGGGCTGGGAAGTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGATGTCAACCCAGAAAAATATGAAACTGGAAAGAAGTTTGGACTCACGGACTTTGTTCATTCTGGAGAATGTGAAAATAAATCTGTGAGCCAGGTCTACCCTCTTCTAGACTCCAATCTTTATTTATTTAATTGCCTTATGTCCTTAATTTTCTTCTCATATGCGGTTGTGAAGCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTGGGCATGGCATCATTGATGCATGAGGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATAATTTTGGGATCGGACAAGCCAGGATCCAAGTTGAGCCTTAGTTGTAGTGAGGTACTCGTTAGTGGGAAGAGCCTCATGGGATGCATATTTGGAGGACTCAAACCCAAGTCTGATGTACCTATTCTCCTTAAACGCTACTTGGACAAGGAACTGAATTTGGATGGGTTTGTCACACACGAGGTGGAGTTCAAGGATATCAACAAAGCTTTTGATTTATTGATTGAAGGACAATGTCTTCGCTGTGTGATTTGGATGGACAAATAA 1245 0.4378 MEDKLATSEGQPIRCKAAICRKPGSPLSIEEIIVASPMPREARIRVICSSLCHSDVTFWKMEVPPAICPRILGHEAVGVVESVGEDVTEVAKGDVVVPIFIPDCGECVDCKSSKSNLCSKFPFEVSPWMPRHATSRFTDLKGEIIHHFLFVSSFSEYTVVDIAHLTKIDPTIPPNRACLLSCGVSTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYETGKKFGLTDFVHSGECENKSVSQVYPLLDSNLYLFNCLMSLIFFSYAVVKQVIIEMTGGGADYCFECVGMASLMHEAYASCRKGWGKTIILGSDKPGSKLSLSCSEVLVSGKSLMGCIFGGLKPKSDVPILLKRYLDKELNLDGFVTHEVEFKDINKAFDLLIEGQCLRCVIWMDK 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02124 414 FunFam Alcohol dehydrogenase 6 18 198 - -
Pumo9g02124 414 FunFam S-(hydroxymethyl)glutathione dehydrogenase 187 286 - -
Pumo9g02124 414 Gene3D - 20 408 - -
Pumo9g02124 414 Pfam Alcohol dehydrogenase GroES-like domain 40 167 IPR013154 -
Pumo9g02124 414 SUPERFAMILY GroES-like 8 193 IPR011032 -
Pumo9g02124 414 PANTHER ALCOHOL DEHYDROGENASE 10 410 - -
Pumo9g02124 414 SUPERFAMILY GroES-like 363 411 IPR011032 -
Pumo9g02124 414 Pfam Zinc-binding dehydrogenase 211 362 IPR013149 -
Pumo9g02124 414 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Pumo9g02124 414 Gene3D - 187 355 - -
Pumo9g02124 414 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 172 375 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02124 Pumo-Chr9 52484961 52502232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02124 40 208 Monolignol Biosynthesis Gene Families AT4G37970 27.907 2.23e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02124 K00121 - gmx:100806887 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02124 9 52484961 52502232 Pumo9g02124 9 52484961 52502232 ECH