Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02100 ATGGCCAAGAAACGAAAGCTTCGATCCTCCGACCCCGAGCCCACCAAACCCGTCGAGCCACAGCAGCAGGACCAAGAGACAGTGGAACTCGACCAACAACAACCCAACCCTGAACCAGCCATCGAAGACCCCAACACCATGGCCCTCGACGGACCAACACAGGAAGAAGAAGAACAGCAAAACGCCGAAGGCGAAGAGGAAAACGAAGCAGAGGAACAGCAAGACCAGGAACCAGAAACCCTAGAAGAGCAACAGGAGCCAGAAACCCTAGAAGCTGCAAACCACGCCGAAGCGAATGGTGCCAATGAAGGAAACAACGAAGAAGAGGAGGATGAGGATCTCACTCTGGAAGAAGAGCCCGTGGAGAAGCTTCTGGAACCGTTCACGAAGGAGCAGCTGCACTCTCTCGTGAAACAGGCCGTGGAGAAGTTCCCCGAATTCGTTGATAGCGTGCGTCAGCTCGCCGACGTGGACCCCGCTCATCGGAAAATCTTCGTCCATGGCCTCGGCTGGGACGCCACCGCCGAAACCCTAACCGCCGTGTTCGGAAAATACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCTGGCAAATCCAAGGGCTACGCCTTTATCCTTTTCAAGCACAGGGACGATGCTCGCAAGGCGCTGAAACACCCCCAGAAGAAGATCGGGAACCGCACCACTTCGTGCCAGCTGGCCTCCGCCGGCCCCGTTCCGGCGCCACCGCCAAACACGACCCCGGTGTCCGAGTACACCCAGAGGAAGATTTTTGTGAGCAATGTGAGTGCTGAGATTGATCCTCAGAAGCTGCTTGAATTCTTCAAGCAGTTTGGGGAGGTTGAGGATGGTCCTCTTGGTTTGGACAAGAACACCGGGAAACCTAAGGGTTTCGCGCTTTTTGTGTATAAGTCTGTGGAGAGTTCTAAGAAGGCTTTGGAAGAGCCTCATAAGATCTTTGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGGAACAAGGGGTACCATCAGTATCATCATCAGCAGCATTCTCATTCTCATCATCATCACCATCATCAGCCTCATTATCAGAGGAAGGAGAAGAACAAGTATTCCTCTGGTGGTGGTGGACCATCGCATGGAAGTGGTCATTTAATGGCGCCCTCGGGCTCTGCTGTGGGGGGTTTCAACCCTGGCGTGCCGGCGCAGGGGTTGAATCCGGCGCTTGGACAGGCGTTGACTGCGTTGTTGACTAATCAGGGAGCTGGATTGGGGCTTGGGAATCTGCTTGGAGGGCTTGGAGGTGCCCCGGTTAACCAGGCGGGGCCACCTGCCCCATATGCGAATCAGCCTGCTATGGGGTATGGGAACCAGCCAGCAATGCAACCCGGATACCAGAATCCTCAAATGGGACAGAGCAGTGGTGTGAGACCTCATCCTGGTGCTGGTGCTCCTTACATGGGTCATTAG 1473 0.5506 MAKKRKLRSSDPEPTKPVEPQQQDQETVELDQQQPNPEPAIEDPNTMALDGPTQEEEEQQNAEGEEENEAEEQQDQEPETLEEQQEPETLEAANHAEANGANEGNNEEEEDEDLTLEEEPVEKLLEPFTKEQLHSLVKQAVEKFPEFVDSVRQLADVDPAHRKIFVHGLGWDATAETLTAVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKHPQKKIGNRTTSCQLASAGPVPAPPPNTTPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESSKKALEEPHKIFEGHTLYCQKAVDGPKGNKGYHQYHHQQHSHSHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSGSAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAGPPAPYANQPAMGYGNQPAMQPGYQNPQMGQSSGVRPHPGAGAPYMGH 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02100 490 Gene3D - 245 384 IPR012677 -
Pumo9g02100 490 MobiDBLite consensus disorder prediction 15 40 - -
Pumo9g02100 490 Gene3D - 47 244 IPR012677 -
Pumo9g02100 490 MobiDBLite consensus disorder prediction 344 366 - -
Pumo9g02100 490 MobiDBLite consensus disorder prediction 338 393 - -
Pumo9g02100 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 239 IPR000504 GO:0003723
Pumo9g02100 490 SMART rrm1_1 259 331 IPR000504 GO:0003723
Pumo9g02100 490 SMART rrm1_1 163 235 IPR000504 GO:0003723
Pumo9g02100 490 MobiDBLite consensus disorder prediction 56 86 - -
Pumo9g02100 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 231 IPR000504 GO:0003723
Pumo9g02100 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 328 IPR000504 GO:0003723
Pumo9g02100 490 Coils Coil 53 76 - -
Pumo9g02100 490 MobiDBLite consensus disorder prediction 1 117 - -
Pumo9g02100 490 MobiDBLite consensus disorder prediction 443 490 - -
Pumo9g02100 490 SUPERFAMILY RNA-binding domain, RBD 242 356 IPR035979 GO:0003676
Pumo9g02100 490 MobiDBLite consensus disorder prediction 103 117 - -
Pumo9g02100 490 MobiDBLite consensus disorder prediction 461 475 - -
Pumo9g02100 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 335 IPR000504 GO:0003723
Pumo9g02100 490 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 62 347 - -
Pumo9g02100 490 SUPERFAMILY RNA-binding domain, RBD 150 241 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02100 Pumo-Chr9 52128787 52130259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02100 254 337 C2H2 Transcription Factor Family AT2G19380 28.571 1.48e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02100 K12741 - gmx:100783742 733.406