Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02087 ATGATTTCAGTTATTGTCGCCAGCATCACCTTTCTGTTGTTTCTCAGAGCCACTGTGTCCTCGTTATCACAAGAGGAAAATAGTGGAAATAGTGGTGAGGATGATCATGATCAGTCGGTAGATGAAGATAGTTTTTTAAAGAAAGGGCCATGGACAACAGAAGAGGATGAAATATTGGCAGCATATGTGACAAAAAATGGAGTGGGAAATTGGAATGTAGTGCGAAGGAACACTGGTCTAGCTCGTTGTGGGAAAAGCTGCCGATTAAGGTGGACAAATCATCTAAGACCAGATTTGAAAAAAGGGGCATTTTCTCAAGAAGAACAACGTAAAATTGTTGAACTCCATGCTTTACTGGGAAATAAATGGGCCAAAATGGCACAGGAGTTGCCTGGACGTACAGACAATGAAATAAAGAACTTTTGGAACACAAGACAAAAGAAATTGAAACGTGCTGGCTTACCACTCTACCCAGAAGACATAAAACCAGTGTTGAATATTGACAAACCACAAAGTAGTCAAAATGCTTCCACCCAGCGTGCTAATGACTCACAAGCAGGCACATCATCATCTAATAATGTACCAGAATTGGTATTCAACAATTACAAGCTCGTCAATCGAAAATATCCATTGTGTGTACCACCAATTTCTGTCACACCCGAAAACAGCACCTTTGAACAACAAGGTTCAGATCCCCCGAAGCAGCTTCATGACCCATACATGCTACCAATTGATTATGGCACTTCCTCAGTATCAGAGCTGCCACCATTCCCATCATTTGATGACTCATTGAGAGTGAGAGAGGATCCTCCAGCTGAGACACAGTACTATGAATCACGTTCTCCACGCAGCAATGGGTATTTGGAATCCATGTTTTGCCCACCACCAAAGATTTTGGGAGGATCAGATCATTGTTCCATGCAAGGGGAGTCAAGTTTAGGAAACAAAGAAAATTCAGACCAGAGAAACCTTGTAAACCAAGATGCATCTTTAGGTGACTTGAATTGGGAAGAGAATTATGACAAGGATCAATACACTCTTAAGGATACTTTATTCAGCATTATCTACCCCTTTTTTCCACACTAA 1086 0.4116 MISVIVASITFLLFLRATVSSLSQEENSGNSGEDDHDQSVDEDSFLKKGPWTTEEDEILAAYVTKNGVGNWNVVRRNTGLARCGKSCRLRWTNHLRPDLKKGAFSQEEQRKIVELHALLGNKWAKMAQELPGRTDNEIKNFWNTRQKKLKRAGLPLYPEDIKPVLNIDKPQSSQNASTQRANDSQAGTSSSNNVPELVFNNYKLVNRKYPLCVPPISVTPENSTFEQQGSDPPKQLHDPYMLPIDYGTSSVSELPPFPSFDDSLRVREDPPAETQYYESRSPRSNGYLESMFCPPPKILGGSDHCSMQGESSLGNKENSDQRNLVNQDASLGDLNWEENYDKDQYTLKDTLFSIIYPFFPH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02087 361 Pfam Myb-like DNA-binding domain 101 144 IPR001005 -
Pumo9g02087 361 Pfam Myb-like DNA-binding domain 48 95 IPR001005 -
Pumo9g02087 361 ProSiteProfiles Myb-like domain profile. 96 146 IPR001005 -
Pumo9g02087 361 CDD SANT 103 144 IPR001005 -
Pumo9g02087 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 95 IPR017930 -
Pumo9g02087 361 MobiDBLite consensus disorder prediction 166 193 - -
Pumo9g02087 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 150 IPR017930 -
Pumo9g02087 361 MobiDBLite consensus disorder prediction 24 44 - -
Pumo9g02087 361 MobiDBLite consensus disorder prediction 29 44 - -
Pumo9g02087 361 CDD SANT 50 95 IPR001005 -
Pumo9g02087 361 ProSiteProfiles Myb-like domain profile. 43 95 IPR001005 -
Pumo9g02087 361 Gene3D - 103 182 - -
Pumo9g02087 361 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 215 - -
Pumo9g02087 361 FunFam MYB-related transcription factor 47 100 - -
Pumo9g02087 361 Gene3D - 47 100 - -
Pumo9g02087 361 SMART sant 100 148 IPR001005 -
Pumo9g02087 361 SMART sant 47 97 IPR001005 -
Pumo9g02087 361 MobiDBLite consensus disorder prediction 167 193 - -
Pumo9g02087 361 SUPERFAMILY Homeodomain-like 47 142 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02087 Pumo-Chr9 51971333 51974075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02087 41 163 MYB Transcription Factor Family AT5G55020 73.171 3.42e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g02087 Myb_DNA-binding 2.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02087 K09422 - gsj:114385238 434.491