Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02043 ATGGCAAACAATGTCTGTGCACCCTCCCTTTCCCCACCTCTATCATCACCTATCCTTGTTATCCCCTCTGAGTTAGATGTCCTTCCCCAGGAACCAACACCTGATGTGGTTGCAATTGCTAGAAGGCCACCTGACTCAGAGAATGAGCCCAAGCCAACCTGGGAGGAATTTCCCAAACCCATAGTCCTGATTATTCCCGCTGGCATAGACATTGTCAATGCCATTATTAATTTTGCCCGTGACCGAGATGTTAGTATCTTGGTGCACCATGCTTCAGGTACCATCTCTGAAGTTAACCTTTACAACCCTGTATCCCCTTCTAATGATTTGTCCTTCCGGGGAAACTTGCACATGTTTTCTTTCACGGGATTTTACACCAAAAGCCTTTCACCTTTACCTCCTAAGAACGTTCCCTTTTCGTACTTCAACATTCAATTTTTGAAGGGAACAGCACTCCAAGCCTTTGGTGGCCTTATTGGACGCAAGCTTATTGCTGCGGAACCTGTGCATGTCATGGCTTCGATCCTCAAGAAGCATGAGTACCAAGAGGTGGGGTATCCCATTACCAATCCAAATACTTGTGCTAACCATTATGCTTCTTTTATGAGTAATGCTATCAATGGCAATCACCCTGGTTTCTCTGTTGGAGCTTCAACCTCATCTCAAATGAATGTCCAACCCCCAGCTGCTCCTACAGATTTGAACATGCTCTATTGGAACAACTCCACCAATCAGGGTGATAATTAA 747 0.4525 MANNVCAPSLSPPLSSPILVIPSELDVLPQEPTPDVVAIARRPPDSENEPKPTWEEFPKPIVLIIPAGIDIVNAIINFARDRDVSILVHHASGTISEVNLYNPVSPSNDLSFRGNLHMFSFTGFYTKSLSPLPPKNVPFSYFNIQFLKGTALQAFGGLIGRKLIAAEPVHVMASILKKHEYQEVGYPITNPNTCANHYASFMSNAINGNHPGFSVGASTSSQMNVQPPAAPTDLNMLYWNNSTNQGDN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02043 248 Gene3D - 59 193 - -
Pumo9g02043 248 ProSiteProfiles PPC domain profile profile. 55 197 IPR005175 -
Pumo9g02043 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 188 IPR014476 GO:0003680
Pumo9g02043 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 59 175 IPR005175 -
Pumo9g02043 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 59 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02043 Pumo-Chr9 50283281 50284027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02043 42 184 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 31.613 1.46e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02043 - - gmx:102666204 261.922