Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02039 ATGTGGTCCACCGCAGCTAGGTCAATCAATTACCCCGAAATGGGGATGTTCGTGGTGGCACCGGCCTCGTCCTTCCACCACCACCACCACCACCACCACCAGCAAACACCGTCGCCACACGACCCCGCCGTCATGGCGGATTCCCTCAACCCCGCCACTGCACTCGGCGTTGGCGTCATCCCCCTCCTCGCTGCCACGCCGTGTCTCGAATCCGACAACATCCTCGGAAACAGGCCACGTGGCGGGGGAATTCAGTTTTGGCAAGACCAACAACCTCATCAAAGCCACTATATGAAGAAACAGCAGGGTCTTCTCGACCATAGTAACACTAGTTCGGGGAATTTGGTTCAGAACAGTGGTGGGGTAACTGCTTCGGGTACTAGTAGTGGGGGAACAACGTGCCAAGATTGCGGAAACCAGGCAAAGAAAGATTGTTCTAATAGAAGGTGTAGAACTTGTTGCAAAAGTCGAGGTTTTGATTGCCCTACTCATGTTAAGAGCACTTGGGTCCCCGCCGCACGCCGGAGAGAGCGCCAGCTTATGACGGCGACCACCGCCGCGGTTGCTGGCTCCAGTGGCTCCACTTCTGGCACTAAAAAACCTAGGCTCATTGCTTCACAAACTACAACTACTTCTCACACTTCCACTTCTAACACCACCCCTCCTAGAAGCTTTGACACTAGCTCTAGCCATCAAGATGCGGGTTTCAAAGAGTCATTACCTGGGCAAGTACGTGCACCAGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTATGCATATCAAGCTGTGGTGAAGATTGGTGGCCACGTGTTCAAAGGGTTTCTCTATGATCAAGGAGTGGAGAATAGGGATGTGTATCCTAACCTATCTGAGTTGCATTTGGGTGGTGGAAGTGGAAGTGGAGGGAGTGGTGGTGGTGGTGTGGGAAGAAATGGGGTTTCATCTTCATCTCCAATGATGGATCCTAATGATGTTTATGCAGCTTCGGGTGGAGGAGGGTTACTAGGGGGTTCTTCAGCTTATGGTAATCCAATGAATTGA 1062 0.5226 MWSTAARSINYPEMGMFVVAPASSFHHHHHHHHQQTPSPHDPAVMADSLNPATALGVGVIPLLAATPCLESDNILGNRPRGGGIQFWQDQQPHQSHYMKKQQGLLDHSNTSSGNLVQNSGGVTASGTSSGGTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTATTAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGSGSGGSGGGGVGRNGVSSSSPMMDPNDVYAASGGGGLLGGSSAYGNPMN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02039 353 MobiDBLite consensus disorder prediction 184 236 - -
Pumo9g02039 353 MobiDBLite consensus disorder prediction 181 240 - -
Pumo9g02039 353 MobiDBLite consensus disorder prediction 108 141 - -
Pumo9g02039 353 NCBIfam LRP1 C-terminal domain 240 287 IPR006511 -
Pumo9g02039 353 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 24 336 IPR007818 GO:0003700|GO:0006355
Pumo9g02039 353 NCBIfam putative zinc finger domain, LRP1 type 133 175 IPR006510 -
Pumo9g02039 353 MobiDBLite consensus disorder prediction 108 144 - -
Pumo9g02039 353 MobiDBLite consensus disorder prediction 304 330 - -
Pumo9g02039 353 Pfam Domain of unknown function (DUF702) 131 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02039 Pumo-Chr9 50244761 50247614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02039 13 332 C2H2 Transcription Factor Family AT5G12330 52.819 1.60e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pumo9g02039 DUF702 9.7e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02039 - - vun:114194574 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02039 9 50244761 50247614 Pumo9g02039 9 50244761 50247614 ECH