Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02035 ATGATGTCGCGGACTGGTAGAATGGCTTCGGATCTTAGCAGAACGGGTCCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAGTTTTGCCCCTTCCGTCTTTCCAATGACGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCACCTTAAACTGAGCCAAGTCTCTAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCTCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACCAGAAGAAGTTCTCCCTTGAATTCTCCCTTTGGCAGTAATGAAAGCCTGCAAAAGGATAGTGGGGATCAACTTCGCCTTCATAGTCCATACGAGAGCCCCCCTAAGAATGGTTTGGATAAACCATTAGATGTGGTTTTGTATGCTGTCCCTCAAAAGGGTTTCTTCCCTCCGGATTCTGCCAGTGCTTCAGTACATTCTGTGTCATCTGGAGGATCAGACAGTATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCACATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTTTGGGTGGTGGGAATCACCGAGTTGGGAGTTGTTTGGGTGCAAAAATGGATTCTCTATTTCCCAAAGCGTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGACGACATGCTGCCCTAGTGACCAAACAAGGCGAAATTTTCTCCTGGGGGGAAGAATCAGGTGGCAGACTTGGGCACGGTGTTGACTCTGATGTTCTTCATCCAAAGCTTATAGAAGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGTGAATATCATACGTGTGCTGTTACACTTTCTGGTGATCTTTATACATGGGGTAATGGCACATACAATTATGGCCTTCTAGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAAAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTAACATCTGCTGGTCAATTATTTACTTTTGGTGATGGTACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCAAGGGAAGTAGAGTCTCTCAAGGGTCTTCGTACTGTGCGGGCTGCATGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCGGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGCCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCCCTTGTTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGCAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAATCCGTGTTGAAGGGAAATTGTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAATTTTAACTTCGAGGACTGAAGTTTACACTTGGGGGAAGGGTGCAAATGGCCGTTTAGGCCATGGGGATACAGACGATAGAAATACCCCAACATTAGTAGAAGCTCTGAAAGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATTTGTTTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCAGGCTGTCGTATGCCATTCAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTCTCAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTTTGTGATAATTGTTTTAATAAACTTAGGAAGACTGTAGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATCAGGGGTCTCTGGAGTTAATTGATAAAGATGATAAATTGGATTCCAGATCTCGTAATCAACTTGCCAGGTTCTCTTCAATGGAATCCTTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCGCCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAATTTTTCTCTGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCACCTCGTTCAACTACACCAACCCCAACATTGGGAGGTCTTACATCCCCAAAGATAGTTGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAAGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCCGGGGAAGAAACTGCCAAATGTAAAGCAGCAAAGGAAGTAATAAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCTGCTAGGAATGTGAAATCACCGACTCTTGCTTCTTCTTTTGGTTCCAATAATGATGTTAGCTATGCTTCCATTGATCGGTTAAATATTCAAGCAACAAGCCCAGAGGCAGATTTAACTGGATCAAACAACCAGTTACATTCAAATGGATCAAGCACTGTCAGTAGCCGTAGCACAGGTCACACGAAACAGAGCCAGTCAGATTCAACAAATAGAAATGGGAGCAGAACTAAGGACAGTGAATCCCGCAATGAAACTGAATGGGTTGAACAAGATGAACCTGGTGTATATATCACACTCACCTCCCTTCCAGGAGGTATAATAGATCTCAAAAGAGTTCGCTTCAGTCGGAAGCGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCCGAGAATCGTGCAAGAGTATACGAACAGTACAATGTACGCATGATTGACAAGTCTTCTGTTGGTGTTGGGAGTGAAGACCTGGCTCATTGA 3318 0.4349 MMSRTGRMASDLSRTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSQVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDQLRLHSPYESPPKNGLDKPLDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSCLGAKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPIRVEGKLSKSFVEEIACGAYHVAILTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTVETDSSSHSSVSRRGSVNQGSLELIDKDDKLDSRSRNQLARFSSMESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPTLASSFGSNNDVSYASIDRLNIQATSPEADLTGSNNQLHSNGSSTVSSRSTGHTKQSQSDSTNRNGSRTKDSESRNETEWVEQDEPGVYITLTSLPGGIIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSSVGVGSEDLAH 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02035 1105 SUPERFAMILY FYVE/PHD zinc finger 656 727 IPR011011 -
Pumo9g02035 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 436 IPR000408 -
Pumo9g02035 1105 SUPERFAMILY RCC1/BLIP-II 267 657 IPR009091 -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 789 803 - -
Pumo9g02035 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 551 IPR000408 -
Pumo9g02035 1105 SMART fyve_4 654 723 IPR000306 GO:0046872
Pumo9g02035 1105 FunFam PH, RCC1 and FYVE domains-containing protein 1 491 661 - -
Pumo9g02035 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Pumo9g02035 1105 PRINTS Chromosome condensation regulator RCC1 signature 439 453 IPR000408 -
Pumo9g02035 1105 PRINTS Chromosome condensation regulator RCC1 signature 382 398 IPR000408 -
Pumo9g02035 1105 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Pumo9g02035 1105 PRINTS Chromosome condensation regulator RCC1 signature 599 620 IPR000408 -
Pumo9g02035 1105 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Pumo9g02035 1105 PRINTS Chromosome condensation regulator RCC1 signature 541 559 IPR000408 -
Pumo9g02035 1105 PRINTS Chromosome condensation regulator RCC1 signature 313 326 IPR000408 -
Pumo9g02035 1105 Pfam Pleckstrin homology domain 23 129 IPR001849 -
Pumo9g02035 1105 CDD PH_PLC_plant-like 20 130 - -
Pumo9g02035 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 834 862 - -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 136 194 - -
Pumo9g02035 1105 SUPERFAMILY PH domain-like 21 129 - -
Pumo9g02035 1105 Gene3D - 21 138 IPR011993 -
Pumo9g02035 1105 Pfam Transcription factor BRX N-terminal domain 917 950 IPR027988 -
Pumo9g02035 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 329 IPR000408 -
Pumo9g02035 1105 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 660 722 IPR017455 -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 728 754 - -
Pumo9g02035 1105 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 65 937 - -
Pumo9g02035 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 655 IPR000408 -
Pumo9g02035 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 605 652 IPR000408 -
Pumo9g02035 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 381 433 IPR000408 -
Pumo9g02035 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 551 599 IPR000408 -
Pumo9g02035 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 500 548 IPR000408 -
Pumo9g02035 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Pumo9g02035 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 437 485 IPR000408 -
Pumo9g02035 1105 Coils Coil 922 942 - -
Pumo9g02035 1105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 729 IPR013083 -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 144 176 - -
Pumo9g02035 1105 FunFam Putative E3 ubiquitin-protein ligase HERC1 662 730 - -
Pumo9g02035 1105 Pfam FYVE zinc finger 656 722 IPR000306 GO:0046872
Pumo9g02035 1105 Gene3D - 498 667 IPR009091 -
Pumo9g02035 1105 Gene3D - 242 497 IPR009091 -
Pumo9g02035 1105 ProSiteProfiles BRX domain profile. 1032 1087 IPR013591 -
Pumo9g02035 1105 CDD FYVE_like_SF 665 718 - -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 768 803 - -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 982 1036 - -
Pumo9g02035 1105 Coils Coil 866 907 - -
Pumo9g02035 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 728 743 - -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 1020 1036 - -
Pumo9g02035 1105 MobiDBLite consensus disorder prediction 982 1019 - -
Pumo9g02035 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Pumo9g02035 1105 FunFam PH, RCC1 and FYVE domains-containing protein 1 239 490 - -
Pumo9g02035 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 603 IPR000408 -
Pumo9g02035 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 316 326 IPR000408 -
Pumo9g02035 1105 Pfam Unstructured region between BRX_N and BRX domain 959 1025 - -
Pumo9g02035 1105 Pfam Transcription factor regulating root and shoot growth via Pin3 1031 1086 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02035 Pumo-Chr9 50139932 50147491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02035 926 1096 Major Intrinsic Protein MIP AT1G31880 32.796 4.13e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02035 - - gmx:100806439 2057.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02035 9 50139932 50147491 Pumo9g02035 9 50139932 50147491 ECH