Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02029 ATGGCTTTCTTTAGGAACTTTTCAAATGATACAGTCTCACATAGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCTAATAGAGTTCATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGCGAACCAGAGGGTTCCAGTAGACTGCAGACTGAGGCAACAGTCGATGATGGAGATGCTGTGAAAGAATCAAACTTGCAGACTACTGGTAGTAAAACAGCTATGGTGGGAAGGTGGGGTTCAACATTTTGGAAGGACTGTGGGCAAATGGACCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGATTATAGAAATGCAGATGGGTCTGAAGACAATTCATTGGATGGAAGAGCGGGAAGATTAGACTCAGATGATGATGATGGACAAAAGGAGGCAGGAAAAGGTCCAAGAGGTCACTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGACTCAATGCATTACGGTGGGATCAAAAAGCCCACTGGATCGAATTCATGGCCACAACGGATGTCAACCTCTGCAAATAGAACTTTGCATAGGAATTCAAGGTTTTCAGATGATGCTGAAGATAATGATGGTGAAGATGATGATGATGGTGATAATGATAATGATGGTGATGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCCACCACAAGTGGTCATGCTGGAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCGGAGGAAGATGATGACAGTGACGAAAATATAGTTGTCTCAGATGATGATGAATCTTTCTATGCTAAAAGACCTAAAGGAACGCAACGAGGTAAGATTGGACAAAATATAAAATCTACCAGAGATCGCAAAGTGTATGCTGCATCTGGTCGACAAAGAAGAGTTAAATCATCTTTTGAGGACAATGAGTCAACAACAGAGGATTCTGACAGTGATAGTGATGAGGATTTCAAAAGCACAAAAAAGCGGAGTGTTCATGTCCGCAAGAATAATGGTCGCTCATCTGCAGCCACAGGTTTTTCTTCGCGCAACAGTGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGGTATCGTATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAAAAGAAAAAGTCTCAAAAGGAAGAAATTGAAGAGGACGACGGTGACTCCATTGAAAAGGTGCTCTGGCATCAGCCAAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCGGAAATTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGATGACATCAGGTACAGGAGGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAGCAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAGGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACATTGATATTGCTTTTGCTCAACATACTATTGATGAGTACAAGGCTCGTGAGGCTGCCATGGCAGTTCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAGGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCCGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCATTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAATACGAATTTTATAATGATAAAAAACCCGGGAAGCCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTCTCCAAAATCAAATGGAATTATCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACGACACTTTCTGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCTTTGCTTCATTTCCTTGATCCTGACAAGTTCAGGAGCAAGGATGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTTAATGAGAATGAGCTTGCAAATCTACATATGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTAAAGAAGTGTTGCAACCATCCCTTCTTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGTAGTGACAACAGTAAACTAGAGAGAATTGTTTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTTTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGGAGAGTATATGTCACTTCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGCACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGAAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTCTGGGTATCAACCTTGCCACGGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACTTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGACCACTTGGTGATTCAAAAACTAAATGCAGAGGGTCGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGACGGGGAACAAGGAAATGAGTTATTAAGTGCTTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGTATTCCAAGCAGAGGAAGCTCTTGCTCCTCGATCTGCTAGAAATATTAAAAGCTATGCAGAGGTTGATCCATCTGAAAGAAGTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAACGAGTTCAGAAACGCCGGAAAGCAGAGTATTCCGCTCCTGCAGTACCAATGATTGATGGAGCATCTGTCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAAAGACGCACTTCGTTTTTCTCGTTCAGTTATGAAATATGGCAATGAGAGCCAAATTGACTTAATTGTTGCTGAGGTTGGTGGTGCTGTTGGGGCAACTCCACCTGGAGCACAGATTGAACTTTTCAATGCTCTTATTGATGGCTGTACAGAAGCAGTGGAACTTGGAAATCTAGATGCAAAGGGGCCTTTGCTGGATTTTTTTGGTGTACCAGTGAAGGCAAATGATCTACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATTGGTCGATATGAAGATCCTATTGCACAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATATATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTAGATGAAAGACTCGGCCTTACGAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCGGTTCTTGGTGTGAAAAATGCCAATAGCAGAGTTGGACGGAAGCCTTCCAAGAAAGAGAGAGAAAATATGATTAACATCGGACTGTCACGTGGGCAGGAGAAAAAGAAAAAATCGGGTTCTGTTAATGTCCAAATGAGAAGGGATAGATTTCAGAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAGTTTAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTTGAAAATACGCAACTATTTACAACTTCTTGGGAGAAGGATAGATCAAATTGTGCTAGAACATGAACAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATACGTCTCCACTTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGGGTTGGCCCCTCTCACGCCAATGGGTCGGTATCTGTTTCATTTAACAGAAATGGAAACCCATTCCGTCGCCATATGGAGAGGCAAAGAGGATTAAAGAATATGACTACCTATCAAATGCCAGAACCAGTTGACAATACTGGGAAATCTGAGGCATGGAAACGAAGAATAAGAACTGAAAGTGACAATCATTTCCAGGGTCAGCCGCCACCTCAAAGGACCATAAGTAATGGAATCCGGATTACTGATCCTAACTCACTTGGGATCCTAGGTGCTGGGCCATCGGACAAACGCTTTGCTAGTGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCAAGACAAGGCTTCTCTTCAGCTTCAGCTATTGTACATTCTGTGGAATTTTTTTCTTCCACCCATGGGAATAAGATCTTGCGGATCCCTTTTTGGTGTCTTTTGGCGGATATGAGAAATATCCCTACACTGGGATTCACATCCTTGAAGATGGCTGAAGCCGAAAAGATCTTAATGCAAGATGAAAAATTAGTCTTGCTAATTGTTTCTTTTTCCCTTTTGATTTCTACCCCTTCTTTGAAGATGACCAAGCAAAGTGACATGGCGAAAATCTTGAAAAGCGAAGAGTTTTTTACCCACTTGCTATAG 5571 0.4087 MAFFRNFSNDTVSHSVMEDKSQGQNANRVHRSVGNECTDATSSEKEFDMNMEAQYESDGEPEGSSRLQTEATVDDGDAVKESNLQTTGSKTAMVGRWGSTFWKDCGQMDPQNGSESGQESKSGSDYRNADGSEDNSLDGRAGRLDSDDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSMHYGGIKKPTGSNSWPQRMSTSANRTLHRNSRFSDDAEDNDGEDDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPTTSGHAGNKDKDWEGEGSEEDDDSDENIVVSDDDESFYAKRPKGTQRGKIGQNIKSTRDRKVYAASGRQRRVKSSFEDNESTTEDSDSDSDEDFKSTKKRSVHVRKNNGRSSAATGFSSRNSEVRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMSHLFDSEIDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMDDIRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHTIDEYKAREAAMAVQGKMVDSQRKKSKASLRKLEEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEVDPSERSNKRKKKEPEPPERVQKRRKAEYSAPAVPMIDGASVQVRNWSYGNLSKKDALRFSRSVMKYGNESQIDLIVAEVGGAVGATPPGAQIELFNALIDGCTEAVELGNLDAKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIGRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSRVGRKPSKKERENMINIGLSRGQEKKKKSGSVNVQMRRDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLLKIRNYLQLLGRRIDQIVLEHEQEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHANGSVSVSFNRNGNPFRRHMERQRGLKNMTTYQMPEPVDNTGKSEAWKRRIRTESDNHFQGQPPPQRTISNGIRITDPNSLGILGAGPSDKRFASEKPYRTQPGGFPSRQGFSSASAIVHSVEFFSSTHGNKILRIPFWCLLADMRNIPTLGFTSLKMAEAEKILMQDEKLVLLIVSFSLLISTPSLKMTKQSDMAKILKSEEFFTHLL 1856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02029 1856 SMART DUF4208_2 1529 1634 IPR025260 -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 316 343 - -
Pumo9g02029 1856 CDD CD1_tandem 425 505 - -
Pumo9g02029 1856 Gene3D - 542 594 - -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 1223 1251 - -
Pumo9g02029 1856 Pfam Helicase conserved C-terminal domain 949 1062 IPR001650 -
Pumo9g02029 1856 Gene3D - 863 1093 IPR027417 -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 223 260 - -
Pumo9g02029 1856 SMART helicmild6 978 1062 IPR001650 -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 196 214 - -
Pumo9g02029 1856 Pfam Chromo (CHRromatin Organisation MOdifier) domain 541 595 IPR023780 -
Pumo9g02029 1856 CDD CD2_tandem 538 594 - -
Pumo9g02029 1856 FunFam Chromo domain-containing protein 1 415 540 - -
Pumo9g02029 1856 ProSiteProfiles Chromo and chromo shadow domain profile. 540 604 IPR000953 -
Pumo9g02029 1856 SUPERFAMILY Chromo domain-like 519 595 IPR016197 -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 126 169 - -
Pumo9g02029 1856 SUPERFAMILY Chromo domain-like 424 507 IPR016197 -
Pumo9g02029 1856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 856 1138 IPR027417 -
Pumo9g02029 1856 Coils Coil 1092 1112 - -
Pumo9g02029 1856 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 952 1103 IPR001650 -
Pumo9g02029 1856 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 169 1662 - -
Pumo9g02029 1856 SMART ultradead3 628 828 IPR014001 -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 370 396 - -
Pumo9g02029 1856 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 863 1093 - -
Pumo9g02029 1856 Gene3D - 623 862 IPR038718 -
Pumo9g02029 1856 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 644 816 IPR014001 -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 79 94 - -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 397 429 - -
Pumo9g02029 1856 FunFam Photoperiod-independent early flowering 1 602 876 - -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 278 295 - -
Pumo9g02029 1856 Coils Coil 1146 1166 - -
Pumo9g02029 1856 Gene3D - 1359 1471 - -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 1638 1663 - -
Pumo9g02029 1856 FunFam protein CHROMATIN REMODELING 5 isoform X2 542 594 - -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 105 125 - -
Pumo9g02029 1856 Pfam Domain of unknown function (DUF4208) 1541 1633 IPR025260 -
Pumo9g02029 1856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 853 IPR027417 -
Pumo9g02029 1856 Gene3D - 413 540 - -
Pumo9g02029 1856 ProSiteProfiles Chromo and chromo shadow domain profile. 427 515 IPR000953 -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 1 429 - -
Pumo9g02029 1856 CDD SF2_C_SNF 938 1073 - -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 1221 1252 - -
Pumo9g02029 1856 Pfam SNF2-related domain 651 920 IPR000330 GO:0005524|GO:0140658
Pumo9g02029 1856 SMART chromo_7 538 597 IPR000953 -
Pumo9g02029 1856 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02029 Pumo-Chr9 50093864 50111887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02029 654 1089 RAD5 or RAD16-like Gene Family AT1G02670 25.992 2.76e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo9g02029 SNF2_N 1.5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02029 K11367 - gmx:100792398 3198.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02029 9 50093864 50111887 Pumo9g02029 9 50093864 50111887 ECH