Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02027 ATGCTAACAGCAATCCTCAGAAGAACGTGTTCCACTCTCTCAAGGCGCGTTTTCCCCGCCGCCTTAATCTCCGCCTCCACCGCCGGCAACCATTTCCGGCCACTCTCGGCCGCCGTCAATTCCCGAACCTTCCACTCCAATCCTGGTCCCTTGAATTTCCGCTCCTCTTTATGTCACCGCGCAGAATACGCCGTAGCCGATTTCCCTTACGAAGAAGGGTCCAAAGGGAACGCCGACGAGGGCCTCGAGATCGCGAAGCTCGGAATTTCTCAGGATATTGTCTCTGCTTTGGCTAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATAGATAAGATCATTCAGTTTAATGCTAAGCATGGGCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCGCGACAGGTTGAAAAGGAGTTCTATGAGACGGCACCTAATTTGGATACAATTTGTGTTTATGGGGGTACACCCATCTCTCGGCAGATGAGGCAGCTTGATTATGGGGTTGATATTGCTGTTGGGACGCCTGGTCGGATTATTGACCTTCTCAACAGAGGCGCTCTAAATTTGAAGGATGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGCTTTCAGGAAGACGTGGAGAAGATCTTGGAGAGGTTGCCCCCAAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTTCGCACAATTACCTGAATGATCCCCTGACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCAGGAATTCTTGCACCTCTAATAACAGAACATGCAAAAGGTGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCGTATACCATGGCAAAAAGTCTTCAATGTGAGGCGTTGCATGGAGACATATCACAAGCTCAAAGGGAAAAAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTGGCCTCGCGTGGGCTTGACATACCTAATGTTGATCTTATAATACATTATGATCTTCCCAATTCTTCGGAGATATTTGTTCATCGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATACAGAAGATCAATCAAGGGCTGTTAGGCTTATTGAGCGTGATGTGGGCTGTAGATTTACAGAGCTACCACAGATTGCTGTTGATAGTGCATCAGTGGATGCAATTGGCATGGGTGGTGGGCGATTTGGTTCTTTCGGAGGTACAAGGGATCGTCGATACGGTGATACAGGTTTTGGCCGTGGTCCTGGATCTGGCCGTTCTGGGGGCTACGGTAACAGTGGATTTGGCCGCTCTAGCTTTGGAGATTCTGGTGAAAGGTTTGGTGGACAGAATTATAATCGTTTTGGTGGCTCTGGTTTGAGTCAATCAGGAGGGGGATTTTCTGGTAATTCATCTGGTGAAATGAATAGATATGGTGGACCAAGCTCTGGTCGTTCTGGCTCATCTGGTGGGTTTGGTTCAGGTCAATCAGGAAGTAGATCTGGTCGATCATCCAGTGGGTCTAGGTTTAGTCGTCCAGATGATTTTGGGGGATTTGGTGGTTCAGATCGTTCGGGTGGTTTTGGAGATTTTGGCTCTGGTCAGCCTAGTGGCTTTGGTGATTCTCGTGGTAGTAATCAGAACAATAGAAGACCCTTTTAA 1872 0.4701 MLTAILRRTCSTLSRRVFPAALISASTAGNHFRPLSAAVNSRTFHSNPGPLNFRSSLCHRAEYAVADFPYEEGSKGNADEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFYETAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISHNYLNDPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYTMAKSLQCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLIIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVRLIERDVGCRFTELPQIAVDSASVDAIGMGGGRFGSFGGTRDRRYGDTGFGRGPGSGRSGGYGNSGFGRSSFGDSGERFGGQNYNRFGGSGLSQSGGGFSGNSSGEMNRYGGPSSGRSGSSGGFGSGQSGSRSGRSSSGSRFSRPDDFGGFGGSDRSGGFGDFGSGQPSGFGDSRGSNQNNRRPF 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02027 623 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 460 IPR001650 -
Pumo9g02027 623 Gene3D - 83 291 IPR027417 -
Pumo9g02027 623 Gene3D - 306 464 IPR027417 -
Pumo9g02027 623 Pfam DEAD/DEAH box helicase 106 275 IPR011545 GO:0003676|GO:0005524
Pumo9g02027 623 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 287 IPR014001 -
Pumo9g02027 623 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 82 463 - -
Pumo9g02027 623 CDD SF2_C_DEAD 313 430 - -
Pumo9g02027 623 SMART ultradead3 101 304 IPR014001 -
Pumo9g02027 623 CDD DEADc 93 288 - -
Pumo9g02027 623 MobiDBLite consensus disorder prediction 608 623 - -
Pumo9g02027 623 Pfam Helicase conserved C-terminal domain 316 421 IPR001650 -
Pumo9g02027 623 FunFam ATP-dependent RNA helicase RhlE 74 290 - -
Pumo9g02027 623 MobiDBLite consensus disorder prediction 524 581 - -
Pumo9g02027 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 442 IPR027417 -
Pumo9g02027 623 MobiDBLite consensus disorder prediction 475 623 - -
Pumo9g02027 623 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Pumo9g02027 623 SMART helicmild6 341 421 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02027 Pumo-Chr9 50047410 50052171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02027 87 458 Eukaryotic Initiation Factors Gene Family AT3G19760 32.979 2.76e-67 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02027 - - gmx:100786041 954.51