Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02022 ATGAAGCTCTCTTCTTCTGGATTTAATCCACCGGCTGAAGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAACTTTGGCATGCATGTGCTGGCCCTCTGGTGTCTCTGCCTCCCGTTGGAAGTCGTGTTGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCATCAACCAACAGGGAAGTAGATGCGCATATTCCGAATTACCCTAACTTGCCACCACAACTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCTCAAATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTGCTGCCTGCAGAATTGGGTACTCCCAGCAAGCAACCAACCAACTACTTCTGCAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACACACAGCAGCCTCCTGCTCAAGAACTAATTGCCAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACAGGGTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGCATACGGCGAGCGAATCGTCCGCAGACTATCATGCCATCATCGGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCTTTGGCCAAGTACGTTAAATCTGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTTGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCGTCTCCATTCCCCTTAAGGTTGAGGCGCCCTTGGCCATCGGGCCTACCTTCTTTATATGGTCTCAAGGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAAGTGGGCTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAGACTTGATGCTTCTATACCAGGTCTCCAACCAGAGTTATACCAAGCAATGACTTCTTCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTTGCAATCTCTGTTGCAGTTTCAGCAGACATCAAATGTTCCCAGTGCCCATGCTTCTGAGGTACAGAGGCAAGTATTACCACAGTCTCAGCCTCAAAACACCCTTCTACACAATTTTCAAGAAAACCAGGTTCCTGCTCAGTCACAACTACTGCAACAGCAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGCAGCAGCAACTTAAAAACTTGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTTTGTCTAATTTTGCATCAGGCACCCAGTCTCAATCTCCTCCCATGCAAGCCCTAGCTTCACATTGCCAGCAACAGAGCTTTCCTGAACCTATCAGGAATCATATTTCCGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGTTCATTCTCCCAGGATGGAACATCCCAGTTACTTAACTTGAGTGGATCCAATTCTGTTATATCTTCTGCAGCCATACTACCCAAGCAAATAACCGTTGAACCTACTCAGCTTCCATCTGCTGCTTCTCAGTGCGTATTGCCTCAGGTGGAAAACTTGGGAACATCACAATCAAATGTGTCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATAGGCAATGTGAATGATTCATTATCTTTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACAGGCACTGATTTCCCCTTAAGTTCAAACATGACAACTTCGAGTTGTGTGGATGAATCAGGCTTCTTGCCGTCTTCAGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCGGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGTAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTTCTTGGTGACGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATACTATCTCCACTAGAAGTGCAACAAATGGGCAAAGGTGTTAGTCCTTCTTCTTCTGCCCCAGGTAACAAAGTTTCTACTCCTGCTAACTCTTGTGATAACTATGTAAGTCAACAAGAGTTGAGAAGTTCGAGAAATGGCATGGCTTCGATGGGATCTTTTCACTACTAG 2691 0.4526 MKLSSSGFNPPAEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKSVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGDMGIGSPFMWLQSGLGDQGMQSLNFQGLGVTPWMQPRLDASIPGLQPELYQAMTSSAFQEMRTMDPSKSLQSLLQFQQTSNVPSAHASEVQRQVLPQSQPQNTLLHNFQENQVPAQSQLLQQQLHRYHPYSDQRQQQQQLKNLPVQQQLPNVISPLSNFASGTQSQSPPMQALASHCQQQSFPEPIRNHISGSDVSPIQSLLGSFSQDGTSQLLNLSGSNSVISSAAILPKQITVEPTQLPSAASQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNIGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVDESGFLPSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKGVSPSSSAPGNKVSTPANSCDNYVSQQELRSSRNGMASMGSFHY 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02022 896 MobiDBLite consensus disorder prediction 851 873 - -
Pumo9g02022 896 FunFam Auxin response factor 127 231 - -
Pumo9g02022 896 ProSiteProfiles PB1 domain profile. 760 846 IPR000270 GO:0005515
Pumo9g02022 896 Gene3D - 756 851 - -
Pumo9g02022 896 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Pumo9g02022 896 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Pumo9g02022 896 Gene3D - 127 230 IPR015300 -
Pumo9g02022 896 FunFam Auxin response factor 293 365 - -
Pumo9g02022 896 SUPERFAMILY CAD & PB1 domains 753 836 - -
Pumo9g02022 896 MobiDBLite consensus disorder prediction 548 570 - -
Pumo9g02022 896 CDD B3_DNA 128 229 IPR003340 GO:0003677
Pumo9g02022 896 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo9g02022 896 Pfam AUX/IAA family 750 844 IPR033389 -
Pumo9g02022 896 SMART B3_2 129 231 IPR003340 GO:0003677
Pumo9g02022 896 Gene3D - 293 365 - -
Pumo9g02022 896 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Pumo9g02022 896 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 852 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo9g02022 896 FunFam Auxin response factor 755 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02022 Pumo-Chr9 49874228 49882034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02022 98 851 B3 DNA Binding Superfamily AT5G37020 55.118 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo9g02022 AUX_IAA 1.4e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02022 - - gmx:100810798 1710.66