Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02017 ATGAACAACAGTATTCCTGGGTGGGATTTTGAGAGTGATGCCTGTCTCACCAACCAAAGAAAGCTCATAGGGCCGGACCAAGAACTTGTGGAGCTCCTATGGCAAAATGGGCAAGTAGTTATGCACAACCAAACACATAGGAAGCCACTTGGGAATTCATCTAACTTGAGACAGGTGCAAAAAACTGATCAATCAACATTAAGGTCCAGTGGACCATATGGGAACTCAAGCAACTTGGATCAAGAAGAGGCAGCCCCATCATGGATCCAATACCCACTTGAGGACCCATTGGAACAAGATTTTTGCTCAAACCTTTTATCTGAACTACCACCACCTTGTGAAGTTGAATCTTTCAAGCCAATCAGGCCATCGGAAGAGGAAAATTTTGCCAAATTTTTTGCCACCACTTCAAGTTCACAACCACTACCACCTAACATGAACCCCTCTTGTGTTGAGGGACTCCAAGGAAATCCTATGCCTGCTCCAAGATTTCATGTTCCTGATTCATCTCAGAAAATCAATGACTTTGTTGCATCACGAAAGGTTCTAAATTTTCCTCACTTTTCAACTCCCCGTAATGTTCCTTCAGCACCTGGTAGTACACAGTTTAGGGAAAAAACTACTGCTAACCTGTCACAAAGTGAGGCTAGAGAGTACTCAGTGATCACAGTTGGTTCGAGTCACTGTGGCAGCAATCACATCCTTCAGGACCAAGATGTAAGCAGGGTTTCAAGCAGTGGTGTTTGGGCCACTACTAATAATACTACTTTATCTGCTGAGCCTGAAGCTGTCAGAGATTGTGTCCAAAGACCAATTTGTCCTAGGAGTGACAAAGGAAAATCAGAGATGATTGAACCAACTGTGACTTCATCTTCCGGTGGCTCAGGTAGTACTGGTATTGGAAGAACTTGTTCCCTATCAACAAGAGATCGTGGCCAAAAGAGAAAAGGGGCAGAAGAAGAAGCATCAGAGGATCAAAGTGAGGCCACAGAACTTAAATCAGCTGATGGAAACAAGGCATCTCAGCGGACGGGGTCTTCTAGAAGGAACCGTGCAGCTGAAGTGCATAACCAATCAGAAAGGAGAAGAAGAGATAGAATCAACGAGAAGATGAGGACATTGCAGCAACTGATACCTAACAGTAACAAGACAGACAAAGCGTCAATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTAATGTGGATGGGGGCTGGCATGACACCAGTGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGTATGGGAATGGGTGCACCTTCTATGCCTTCCATTCACAATCCGATGCAATTGCCAAAAGTGCCACATGATCAAGCCATGCCTGTGCCTCAGATACCAAACCAGAATTTAATGTGCCAAAATCCAGTTTTGGGTGCCTTTAATTACCAAAACCAGATGCAAAACCCGTGCCTTCCAGAACAATATGCACGTTACATGGGTTACCATCTTATGCAAAGTGCCTCTCAGCAGCCAATGAATGTGTTCAGATATGGTTCCCAAGCAGTGCAACATAGTCAAACAATGATTGCACCAGGCAATAATAGCAGCGGACCCATGAGTGGAACAAGTAACATTGATGATGCTGTTAGTGGCAAAACGGGTTCTTCCACCTTTAACTGA 1665 0.442 MNNSIPGWDFESDACLTNQRKLIGPDQELVELLWQNGQVVMHNQTHRKPLGNSSNLRQVQKTDQSTLRSSGPYGNSSNLDQEEAAPSWIQYPLEDPLEQDFCSNLLSELPPPCEVESFKPIRPSEEENFAKFFATTSSSQPLPPNMNPSCVEGLQGNPMPAPRFHVPDSSQKINDFVASRKVLNFPHFSTPRNVPSAPGSTQFREKTTANLSQSEAREYSVITVGSSHCGSNHILQDQDVSRVSSSGVWATTNNTTLSAEPEAVRDCVQRPICPRSDKGKSEMIEPTVTSSSGGSGSTGIGRTCSLSTRDRGQKRKGAEEEASEDQSEATELKSADGNKASQRTGSSRRNRAAEVHNQSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMWMGAGMTPVMFPGIQHYMSQMGMGMGAPSMPSIHNPMQLPKVPHDQAMPVPQIPNQNLMCQNPVLGAFNYQNQMQNPCLPEQYARYMGYHLMQSASQQPMNVFRYGSQAVQHSQTMIAPGNNSSGPMSGTSNIDDAVSGKTGSSTFN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02017 554 PANTHER TRANSCRIPTION FACTOR PIF3 17 514 IPR044273 GO:0003700|GO:0006355
Pumo9g02017 554 MobiDBLite consensus disorder prediction 283 307 - -
Pumo9g02017 554 MobiDBLite consensus disorder prediction 268 369 - -
Pumo9g02017 554 MobiDBLite consensus disorder prediction 349 369 - -
Pumo9g02017 554 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 414 IPR036638 GO:0046983
Pumo9g02017 554 MobiDBLite consensus disorder prediction 333 348 - -
Pumo9g02017 554 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
Pumo9g02017 554 MobiDBLite consensus disorder prediction 308 332 - -
Pumo9g02017 554 FunFam Basic helix-loop-helix transcription factor 346 409 - -
Pumo9g02017 554 SMART finulus 357 406 IPR011598 GO:0046983
Pumo9g02017 554 Coils Coil 315 335 - -
Pumo9g02017 554 MobiDBLite consensus disorder prediction 45 83 - -
Pumo9g02017 554 MobiDBLite consensus disorder prediction 523 554 - -
Pumo9g02017 554 Coils Coil 357 377 - -
Pumo9g02017 554 CDD bHLH_AtPIF_like 351 414 IPR047265 -
Pumo9g02017 554 Gene3D - 346 407 IPR036638 GO:0046983
Pumo9g02017 554 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02017 Pumo-Chr9 49825206 49829956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02017 7 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 36.278 1.19e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g02017 HLH 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02017 K16189 - gmx:100811777 973