Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01992 ATGGATGTGGCCAAGTTACATAACTCTGATGATGATGACAAGAAAGAAGATGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCAACAGATGAAGAGCTTGTGGGGTTTTATCTGAGACGAAAGGTGGAGAAGAAGCCTCTGAGAATTGAACTCATCAAACAGATTGACATCTACAAATACGATCCATGGGATCTTCCAAAAGTGAGTTCAGTGGGGGAGAAGGAATGGTACTTCTTTTGCATAAGAGGGAGAAAATACAGGAACAGCATAAGGCCGAATAGGGTGACAGGGTCTGGATTTTGGAAAGCCACAGGGATTGACAAGCCTATATACTGTGTTAAAGAACCCCATGAATGCATTGGCCTAAAGAAATCATTGGTCTACTATCGTGGAAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCACCCAATGGAAAAGCTAGCAATAATCCACAAGCTAATGATGCCAATGATGTTCAAGAAGCTGAAGTGTGGACGCTATGCCGAATATTCAAACGAGTCCCATCTTACAAGAAGTACTACACACCAAATTTGAAAGACTCAGCAGCAGCACCAATCACGAAGCCAAACCCTTCAAGTTCCAAAACATGCAGCTTAGAATCTGACAACGGCAAGCCATACTTGACTTTCACAAACTCATCACCACTACTCATTCAACAAAATGAAAGGAAACCAGTTATTAATGACGTTGAACGTAACCACCACTTTTTTCTAGGTCAATTAGCCAATGTAGCTCAGGCTCCAACATCCTTCTCTTACTCCAGTTTTTGGAATCATCATCAGAATAATGTGGAACTTGCTAATGAGAATTGGGATGATCTCACATCTGTCGTTCAGTTTGCTATTGATCCATCCAGGGTTTCTGTTTCTGATCATTGTAAAGAAGTTAATAGATTTTAA 942 0.414 MDVAKLHNSDDDDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPKVSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKASNNPQANDANDVQEAEVWTLCRIFKRVPSYKKYYTPNLKDSAAAPITKPNPSSSKTCSLESDNGKPYLTFTNSSPLLIQQNERKPVINDVERNHHFFLGQLANVAQAPTSFSYSSFWNHHQNNVELANENWDDLTSVVQFAIDPSRVSVSDHCKEVNRF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01992 313 ProSiteProfiles NAC domain profile. 20 180 IPR003441 GO:0003677|GO:0006355
Pumo9g01992 313 MobiDBLite consensus disorder prediction 200 214 - -
Pumo9g01992 313 Gene3D NAC domain 29 183 IPR036093 GO:0003677|GO:0006355
Pumo9g01992 313 SUPERFAMILY NAC domain 19 179 IPR036093 GO:0003677|GO:0006355
Pumo9g01992 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 256 - -
Pumo9g01992 313 MobiDBLite consensus disorder prediction 195 214 - -
Pumo9g01992 313 FunFam NAC domain-containing protein 35 29 183 - -
Pumo9g01992 313 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01992 Pumo-Chr9 49360851 49364612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01992 14 181 NAC Transcription Factor Family AT5G39820 60.556 3.57e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo9g01992 NAM 3.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01992 - - gmx:100784323 555.058