LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo9g01964	ATGCAGGAGCCCCTCCTGAGCCCTTGCCCCAGGAAAGAAGTAGACTCACCAAACAGACCATCACCCAAGGAACTATCTGTCCATGATCTTGGTCTTGCTCTTGCCTCATCACTGTTCCAATCTAGCTCTTCTCATGTCACCAATGAAGCCAAGAGTTCCATGAACCTCATAGCCAACTTGGCCTTGAAGAAAGGGAGGATTATCCATCGCTCTCGCTCTGCACCATCTTTATTATTCACTGACAGGGGGGTAGATTTTCAAGAGCCCTCTGAACCACATAAGTCATCAACTTTAATAGTTAGGCAATCATTTATTGGTGTTTTCTTGTATGTGGCAACTGGGGTAGCAGTGTACATGACCAGTGGGAGCTTCAGGGGCACTACCACTTTCAAGCCTGTAGATGCTGTGTACTTTACAATGGTAACTCTCTGCACTATTGGGTATGGAGATATCGTTCCTGACTCTACGTTTACCAAAATCTTTACATGTGGTTTCATTTTGGTGGGTTTTGGGTTTATTGGTTTTCTGCTCAATGGATTGGTTGCATACATTTGTGATACACAAGAGGCATTCTTGTTGAGCATGATGGATGAGAATAGATATAAGAAAATTCTCAGGACGTATATGGTTGATGAAGCGAAAGGAAGAATGAGGATAAGAACCAAAGTTTGTCTGGCTTTGGCTGTTGTGATTGGCTGCATTGCTATAGGAACACTCACAGTGCACTATGTTGAGGACCTGAATTGGGATGACAGTATTTATCTCTCCATTACTTCTGTTACAACGGTTGGTTATGGGGATTTTTCTCTCAGAACAGCATCCGGAAGATGCTTTGCAATTATATGGCTTTTGGTTAGCACACTGGCAGTTGCCAGAGCCTTTATATACCTCACTGAATATAGTATTCACAAGAGAAATCGTAAGATGGCAAAATGGGTTCTTCAGAAGAAGATAACCTTGTCAGATTTAGCTGCTGCAGACCTTGATAATGATGGATCTATCAGCAAGTCTGACTTTGTCATATACAAGCTTAAGCAAATGGGGAAGGTTACTGAGATAGACATTCTGCAAATAAGCAAACAATTTGATTCCTTGGAACATGGCATGTATGGCAAGATTACTCTTGCTGATCTCATGGAAACTGTCTAA	1149	0.4212	MQEPLLSPCPRKEVDSPNRPSPKELSVHDLGLALASSLFQSSSSHVTNEAKSSMNLIANLALKKGRIIHRSRSAPSLLFTDRGVDFQEPSEPHKSSTLIVRQSFIGVFLYVATGVAVYMTSGSFRGTTTFKPVDAVYFTMVTLCTIGYGDIVPDSTFTKIFTCGFILVGFGFIGFLLNGLVAYICDTQEAFLLSMMDENRYKKILRTYMVDEAKGRMRIRTKVCLALAVVIGCIAIGTLTVHYVEDLNWDDSIYLSITSVTTVGYGDFSLRTASGRCFAIIWLLVSTLAVARAFIYLTEYSIHKRNRKMAKWVLQKKITLSDLAAADLDNDGSISKSDFVIYKLKQMGKVTEIDILQISKQFDSLEHGMYGKITLADLMETV	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo9g01964	382	PRINTS	Two pore domain K+ channel signature	141	169	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pumo9g01964	382	PRINTS	Two pore domain K+ channel signature	261	270	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pumo9g01964	382	FunFam	Two-pore potassium channel 2-like	98	194	-	-
	Pumo9g01964	382	ProSitePatterns	EF-hand calcium-binding domain.	327	339	IPR018247	-
	Pumo9g01964	382	Gene3D	-	90	188	-	-
	Pumo9g01964	382	SUPERFAMILY	Voltage-gated potassium channels	96	184	-	-
	Pumo9g01964	382	SUPERFAMILY	Voltage-gated potassium channels	196	317	-	-
	Pumo9g01964	382	Gene3D	-	190	326	-	-
	Pumo9g01964	382	MobiDBLite	consensus disorder prediction	1	25	-	-
	Pumo9g01964	382	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	128	356	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pumo9g01964	382	FunFam	Two-pore potassium channel 3	206	320	-	-
	Pumo9g01964	382	Pfam	Ion channel	229	294	IPR013099	-
	Pumo9g01964	382	Pfam	Ion channel	107	183	IPR013099	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo9g01964	Pumo-Chr9	49127029	49129756	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo9g01964	64	380	Ion Channels	AT4G18160	49.533	3.42e-107	320

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo9g01964	K05389		-	gmx:100789639	651.358