Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01943 ATGACAGTCATCGAATCGGCCAAAAACCGGAATAAATCGATGAAACCCGGTTTCGAGCGGACCGAACTCAACCTACGAGTTAACTGTGCGAACGTGGCCCAAGACGCCCTCTTATACCTCTCCCCTCCAAACCCCGTCTTGTTCCCTCTGTCCACGTCACCCCTTCCTTATTCTCGTCCCTCGACCCCAACGGTGTCGTTCTCTGCTCCCTGTGTAAGGACCAACCTCGACGCGGAAGCCAAACATTTACCCTGCAAACACCTTTACCACGCGGACAACATCATGTCGTGGCTAGAACTCCACACGTCATGTCCGTTATGCAGGTTTCAGCTTGAGATCAGGAGGAAAGAGCTTATTGCGAGCTCTGACGGGGTTGACAAAGGAGGATTTCTACATGTTTAG 402 0.5199 MTVIESAKNRNKSMKPGFERTELNLRVNCANVAQDALLYLSPPNPVLFPLSTSPLPYSRPSTPTVSFSAPCVRTNLDAEAKHLPCKHLYHADNIMSWLELHTSCPLCRFQLEIRRKELIASSDGVDKGGFLHV 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01943 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 126 IPR013083 -
Pumo9g01943 133 SUPERFAMILY RING/U-box 77 113 - -
Pumo9g01943 133 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 79 111 - -
Pumo9g01943 133 Pfam Ring finger domain 78 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01943 Pumo-Chr9 48942917 48943928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01943 79 133 C3H Transcription Factor Family AT1G68180 43.636 1.39e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01943 K11982 - gmx:100775530 79.7221