Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01941 ATGGAGTTTCCCAACGAAGCAATATCAGAAGGGTCTTCTCATCAGAAGAAAACGGGAAGAGGGAAAATAGAAATCAAACGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAGCGTCGCAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTGTGTGATGCTGAGGTTGCCCTTGTTGTCTTCTCAACCCGTGGACGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATGTGCTGCTTCCTCAAATGCAGAATCTGTCTCCGAAGCTAATACACAGTTTTATCAGCAGGAAGCGTCCAAATTAAAAAGACAAATCAGAGACATACAGAATCTAAACAGGCACATTCTAGGTGAAGCTCTTAGCTCTCTGAGTCTAAAGGAATTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAGCATGAAACATTGTTTGCCGATATCGAGTTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCATAATAATTTTCTGCGAGCTAAGATAGCTGAACACGAGAGAGCACAACAACAACGGCAAGAGAATATGATGCCGGGAACAGTGTGCGAGTCCATACCTTCACAACCATATGACCGCAATTTCTTCCCTGTAAATCTCATAGATTCCAATAATCAATTTTCACGTCAAGACCAGACTGCTCTTCAACTTGTGTAA 732 0.4235 MEFPNEAISEGSSHQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRGTIDRYKKACAASSNAESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAEHERAQQQRQENMMPGTVCESIPSQPYDRNFFPVNLIDSNNQFSRQDQTALQLV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01941 243 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Pumo9g01941 243 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Pumo9g01941 243 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Pumo9g01941 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Pumo9g01941 243 FunFam agamous-like MADS-box protein AGL11 30 113 - -
Pumo9g01941 243 SUPERFAMILY SRF-like 19 93 IPR036879 GO:0003677|GO:0046983
Pumo9g01941 243 ProSiteProfiles K-box domain profile. 104 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo9g01941 243 Coils Coil 104 127 - -
Pumo9g01941 243 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Pumo9g01941 243 ProSitePatterns MADS-box domain signature. 20 74 IPR002100 GO:0003677|GO:0046983
Pumo9g01941 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 199 - -
Pumo9g01941 243 Gene3D - 30 116 IPR036879 GO:0003677|GO:0046983
Pumo9g01941 243 MobiDBLite consensus disorder prediction 1 23 - -
Pumo9g01941 243 Coils Coil 138 158 - -
Pumo9g01941 243 Pfam K-box region 102 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo9g01941 243 CDD MADS_MEF2_like 19 95 IPR033896 GO:0000977|GO:0045944
Pumo9g01941 243 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01941 Pumo-Chr9 48893279 48899804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01941 11 243 MADS-box Gene Family AT3G58780 71.311 1.41e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo9g01941 K-box 4.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01941 K09264 - gmx:100792224 409.838