Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01909 ATGAGAAGACCGAAATCGAGAGAGTTTCGCAAGCAACAGCGAGTCTCGGAGGAGGAAGAGATAAACCTCTTGAATTCATGGATTCAGTTTCAGCCACCGGACTCCGGTTCGAACCCAATGTCGCTCCCTCCTCTCCCCAAAAACTCCCGTGTTGGCCGCCTCGATGACGACACCTACTCGCGCTACGCCGGCGCGTGCAGGTTCGACCAATTCCCGCTCTCGAAGAAAACCAAGGACGCCCTAAGAGAGGCCAAGTTCGTGGCCATGACCGACATTCAGAGAGCGTCTCTCCCCCACGCGCTCTGTGGCCGCGACATCCTCGGCGCCGCCAAAACTGGCTCCGGTAAAACCCTCGCTTTCATTATCCCTGTGTTGGAGAAGTTGTATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATCATATCGCCTACGAGAGAATTGGCTGGTCAGTTGTTTGATGTGTTGAAGGTTGTTGGCAAACACCATAACTTTAGTGCTGGTCTTCTCATTGGTGGTCGAAAGGATGTTGACATGGAGAAAGAACGCGTTAATGAGCTCAACATATTGATCTGCACGCCTGGTAGACTGCTGCAACACATGGATGAAACTCCCAATTTTGAATGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGGATTCTAGACAGTGGGTTCAAGAGGGAACTAAATGCAATCATTTCTCAACTACCAAAGCATAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCAAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTGCACGAAGAATCTGTGACTGCCACTCCTTCTCTGTTGAAGCAAATTGTGATGATTGTTCCCCTGGATCAAAAGTTGGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCGAAAATACTTGTCTTTCTTTCAAGCTGTAAACAGCATTTAAGAAACTGCACCCTGGCATACCATTGA 1002 0.479 MRRPKSREFRKQQRVSEEEEINLLNSWIQFQPPDSGSNPMSLPPLPKNSRVGRLDDDTYSRYAGACRFDQFPLSKKTKDALREAKFVAMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKVVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFECSQMQVLVLDEADRILDSGFKRELNAIISQLPKHRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPSLLKQIVMIVPLDQKLDMLWSFIKTHLQSKILVFLSSCKQHLRNCTLAYH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01909 333 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Pumo9g01909 333 MobiDBLite consensus disorder prediction 30 53 - -
Pumo9g01909 333 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Pumo9g01909 333 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Pumo9g01909 333 CDD DEADc_DDX10 77 275 - -
Pumo9g01909 333 PANTHER RNA HELICASE 64 323 - -
Pumo9g01909 333 Gene3D - 50 278 IPR027417 -
Pumo9g01909 333 SMART ultradead3 85 289 IPR014001 -
Pumo9g01909 333 MobiDBLite consensus disorder prediction 30 44 - -
Pumo9g01909 333 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Pumo9g01909 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 274 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01909 Pumo-Chr9 48236628 48371683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01909 93 320 Eukaryotic Initiation Factors Gene Family AT3G19760 28.448 1.23e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01909 K14776 - gmx:100820055 615.15