Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01906 ATGAAGATACTTTCACATGCTTTTGACAGTAGCTTAGGGGGGAGAGACTTTGATGAGGTTCTGTTTAGTCATTTTGCAGCAAAATTTAAGGAACAGTACAGCATTGACGTGTATTCTAATGCCAGGGCATGTAGGAGGCTGCGTGTAGCATGTGAGAAGTTGAAGAAGGTTTTGAGTGCAAATGCAGAGGCTGATCTGAGCATTGAGTGTTTGATGGATGAAAAAGATGTTAAGGGCTTTATCAAGAGGGAAGAATTTGAGAATCTGGCATCAGGATTATTGGAGAGAATTATTATTCCTTGCAACAAAGCATTGGCTGATGCCGGCTTGACTGTAGACAAGATTAATTCTGTTGAGTTAGTTGGTTCAGGTTCACGGATTCCAGCTATAACTAGATTATTAACTTCTCTATTTAAGAGAGAACTCAGCCGCACGCTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTCCAGTGTGCTATGCTCAGTCCTGTTTTCCGTGTCAAAGAATATGAGGTCCAGGATTCTATTCCTTTTTCCATTGGACTTTCATCTGATGGACGTCCAATTTGTGCAGGATCAGATGGTGTACTCTTCCCAAAAGGCCAACCCATTCCAAGTGTTAAAATTCTAACATTTCAGTGCAGTAATTTGCTCCGTCTGGATGCATTCTATGCTAATCCAGATGAATTACCACCTGGGATATCTCCTAAAATCAGTTGCTTCACAATTGATCTTTTCCATAGATCCCATGGAAGTAAGGCGAGAATTAAAGTTCGAGTTCAACTAAATTTGCATGGCATTATCAGTATCGAATCAGCTACATTGGTCGAGGATCATGTGGATGATTCAGTTACAACAGGTGGTTATCATTCAAATTCTGAAGCAATCAATGTTGAACCTGTTTCTGAAACAATTGAAAATGTCACAGAAGATAGTATCAATAAAAAGTGTGAAGCTCCGCATCATTCTGCTGATGGTACAAAAAAAGATAAAGCTAACAGAAGACTTCATGTACCAGTGAGTGAAAACATCTATGGTGGAATGACCAAGGCTGAGATCTTGGAAGCTCAAGAAAAAGAACTCCAGTTAGCCGATCAGGACAGAACAATTGAGCTAACCAAAGACATGAAGAATTCGTTGGAGTCTTATATTTATGAAACGAGGAGTAAGCTCTTCAGCACATATCTAAGTTTTTCAAGTGAACATGAGAGGAAGGACATATCTAGGAGCCTGAAAACAACTGAGGATTGGCTTTATGATGATGGTGATGATGAAACTGTAGATGCTTATTCTGCAAAACTAGAAGATCTAAAACAGCTGGTGGATCCAATTGAGTTTCGGTATAAAGACACAGAAGCCAGACCACAAGCTACAAGAGATTTGTTAAGTTGCATTGTAGAGTATCGAATGTCTGCAGATTCTCTTCCACCCCAAGATAAAGAACTGATCATCAATGAGTGCAATAAAGCAGAGCAGTGGCTAAGAGAGATGAGGCAACAGCAAGATCTTTACCCTAAGAACTTTGATCCGGTATTATTGTCAAGTGATATCAAGAGCAAGACAGAAGATTTAAACTTAGTATGCCAACAGATATTGGAATCCAAGGGTTCTCCACTTCCTAAAGACAAGGGTGAAGACAAGCAGAATACTTATAATCATCAATGA 1671 0.398 MKILSHAFDSSLGGRDFDEVLFSHFAAKFKEQYSIDVYSNARACRRLRVACEKLKKVLSANAEADLSIECLMDEKDVKGFIKREEFENLASGLLERIIIPCNKALADAGLTVDKINSVELVGSGSRIPAITRLLTSLFKRELSRTLNASECVARGCALQCAMLSPVFRVKEYEVQDSIPFSIGLSSDGRPICAGSDGVLFPKGQPIPSVKILTFQCSNLLRLDAFYANPDELPPGISPKISCFTIDLFHRSHGSKARIKVRVQLNLHGIISIESATLVEDHVDDSVTTGGYHSNSEAINVEPVSETIENVTEDSINKKCEAPHHSADGTKKDKANRRLHVPVSENIYGGMTKAEILEAQEKELQLADQDRTIELTKDMKNSLESYIYETRSKLFSTYLSFSSEHERKDISRSLKTTEDWLYDDGDDETVDAYSAKLEDLKQLVDPIEFRYKDTEARPQATRDLLSCIVEYRMSADSLPPQDKELIINECNKAEQWLREMRQQQDLYPKNFDPVLLSSDIKSKTEDLNLVCQQILESKGSPLPKDKGEDKQNTYNHQ 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01906 556 PANTHER HSC70CB, ISOFORM G-RELATED 1 549 - -
Pumo9g01906 556 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 170 348 IPR029047 -
Pumo9g01906 556 MobiDBLite consensus disorder prediction 540 556 - -
Pumo9g01906 556 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 352 449 IPR029048 -
Pumo9g01906 556 Gene3D - 2 143 - -
Pumo9g01906 556 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 167 383 IPR029047 -
Pumo9g01906 556 FunFam Heat shock 70 kDa protein 4 13 96 - -
Pumo9g01906 556 FunFam Heat shock 70 kDa protein 4 350 460 - -
Pumo9g01906 556 FunFam Heat shock 70 kDa protein 16 isoform A 170 348 - -
Pumo9g01906 556 MobiDBLite consensus disorder prediction 315 335 - -
Pumo9g01906 556 SUPERFAMILY Actin-like ATPase domain 2 163 IPR043129 -
Pumo9g01906 556 Gene3D - 144 157 - -
Pumo9g01906 556 PRINTS 70kDa heat shock protein signature 255 271 - -
Pumo9g01906 556 PRINTS 70kDa heat shock protein signature 115 131 - -
Pumo9g01906 556 PRINTS 70kDa heat shock protein signature 171 190 - -
Pumo9g01906 556 PRINTS 70kDa heat shock protein signature 146 166 - -
Pumo9g01906 556 MobiDBLite consensus disorder prediction 537 556 - -
Pumo9g01906 556 Gene3D - 350 462 IPR029048 -
Pumo9g01906 556 Gene3D Actin; Chain A, domain 4 13 96 - -
Pumo9g01906 556 Pfam Hsp70 protein 2 448 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01906 Pumo-Chr9 48202396 48207461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01906 1 214 Calmodulin-binding Proteins AT1G16030 36.406 2.18e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01906 K09489 - gmx:100795914 1030.78