Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01896 ATGCCTATTACCAACACTTCTCCCACTATGACCAACTGGTTTTCTGAAATGATGATAGAAACAGTAACAAGGTGTAAGCAACTTTGCATTGGCGGTTCTGTAGTTGGGCTATTCATGAAAGCTTTGGAGAGAGTTCTTTTTGCTCTATTTACTTGCATTCTAGCTCTAGGAGGGTCGATAGTAGGAACTATTGCAGGAGGCATCAAAGGGCAGACCACAGAAGCTGGTTTTCTTGATGGGGCTGGCAAAGGAGCAATTACAGGAGCCATTGCAGCATTGGAATTGATCAATTTTGATGCTGTTGATGAGCCACTGTCCAAGGTTGCCCTCTTGAGCAGTTTATTAAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTTACAAAACTCTATCAGTTGCATGTAACTGTTAACACACTGGAAACAATTTACCAAGAAGTATCAGACATTTATGATATCAGGGGAGTCAGAGGGATACCCCATAATGTAATTATGAAGCTTCCCTTTCAGCCATTCAACTCTAGCAAAATGTTGAAATTATACAACATGTCTTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTGGTCAGGATACTTCCAAAATGTGGCCACCTTTTTCATCTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCATGCCCAATGTGCAGAACTTATGTTCCAGACCACATTCGTAAATAA 717 0.41 MPITNTSPTMTNWFSEMMIETVTRCKQLCIGGSVVGLFMKALERVLFALFTCILALGGSIVGTIAGGIKGQTTEAGFLDGAGKGAITGAIAALELINFDAVDEPLSKVALLSSLLNGKVFMEWICPAVTKLYQLHVTVNTLETIYQEVSDIYDIRGVRGIPHNVIMKLPFQPFNSSKMLKLYNMSCCSICFQDFEDGELVRILPKCGHLFHLECIDKWLVQQGSCPMCRTYVPDHIRK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01896 238 SUPERFAMILY RING/U-box 186 234 - -
Pumo9g01896 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Pumo9g01896 238 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 37 230 IPR044523 -
Pumo9g01896 238 SMART ring_2 187 228 IPR001841 -
Pumo9g01896 238 Pfam Ring finger domain 187 229 IPR001841 -
Pumo9g01896 238 CDD RING-H2_EL5-like 186 229 - -
Pumo9g01896 238 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01896 Pumo-Chr9 48135459 48137727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01896 42 232 C3H Transcription Factor Family AT5G66070 35.500 4.47e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01896 - K19041 gmx:100305612 417.927