Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01892 ATGCCTTCGGCTCAAGATCCATTCTACGTTGTCAAGGAGGAGATTCAAGATTCTATTGATAAGCTGCAATCTACTTTTCACCAATGGGAAAACACTGCTGATGCTGGCGAGCGATCCAATCTATCAAAGGAAGTTCTTTCTAGTTGTGAAAGCATTGAATGGCAGGTGGATGAATTGGACAAAGCAATTGCTGTAGCCTCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAAGCGGAGGAAGTGGACCAGTGATGCTCGCACCCAGGTGAGCACAGCAAAGAAAGCAGTGGAAGCTGGAAAGGGCTCAAACAATGCTAGTCTAAATGGGATGCATAGGGAATTAATGAGGCTTCCTAATTCTCATCAAACCACATCTAATCAATATGCTGCCCAGGATAATGATGATTTCATAGAGTCAGAATCGGATAGGCAGATGCTTCTTATAAAGAGACAAGATGAGGAGTTGGACGAGCTTAGTTTAAGTGTACAAAGAATAGGAGGTGTTGGACTTACTATACATGAAGAGCTCCTTGCACAGGAAAAGATTATCGATGAACTGGGTAATGAGATGGACAGTACATCAAATCGCCTAGATTTTGTCCAAAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGTGCGAAGGGCCAGATCATGATGATATTGGGTTTGCTGGCGCTGTTCATTTTCCTCTTTATCTTGGTATTCTTCACCTAG 729 0.4266 MPSAQDPFYVVKEEIQDSIDKLQSTFHQWENTADAGERSNLSKEVLSSCESIEWQVDELDKAIAVASRDPSWYGIDEVEIEKRRKWTSDARTQVSTAKKAVEAGKGSNNASLNGMHRELMRLPNSHQTTSNQYAAQDNDDFIESESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELLAQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01892 242 SMART tSNARE_6 145 212 IPR000727 -
Pumo9g01892 242 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Pumo9g01892 242 CDD SNARE_Qc 153 210 - -
Pumo9g01892 242 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 150 212 IPR000727 -
Pumo9g01892 242 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Pumo9g01892 242 FunFam syntaxin-61 isoform X1 153 214 - -
Pumo9g01892 242 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Pumo9g01892 242 Coils Coil 12 32 - -
Pumo9g01892 242 Gene3D - 157 221 - -
Pumo9g01892 242 FunFam Syntaxin 10 3 104 - -
Pumo9g01892 242 Pfam SNARE domain 187 238 IPR000727 -
Pumo9g01892 242 Coils Coil 188 208 - -
Pumo9g01892 242 SUPERFAMILY SNARE fusion complex 148 212 - -
Pumo9g01892 242 Gene3D - 2 104 - -
Pumo9g01892 242 PANTHER SYNTAXIN 13 234 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01892 Pumo-Chr9 48095327 48099251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01892 55 242 SNARE and Associated Proteins AT1G28490 69.474 2.17e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01892 K08500 - gmx:100793612 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00891 1 13497718 13501776 Pumo9g01892 9 48095327 48099251 PCT