Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01867 ATGTGTGAAGCCGTGGAAACTGAAGAAAGGCCCAAATTCAAAGATATTAGACGCTATTTCTGCGAGTACTGCGGTATCTGCAGGTCCAAAAAAGCCCTTATCACCTCGCACATCAATTTGCACCACAAGGAAGAGGATGAAAAAGCAAGAGCTGAAAGAGATCCCGAAGCAGAGGCTTCAAATTCCAACACGTGCGAGGAGTGTGGTGCCACTTTCAAAAAACACGCCTATTTGTTGCAGCACATGCAAAGTCATTCACTTGAGAGGCCGTTTGTGTGTGCTGTCGATGATTGTCAGGCAAGTTACAGAAGGAAGGACCACCTGACTCGGCACCTTCTACAGCATGAAGGGAAGACTTTTAAGTGCCCTGTTGGGAATTGCAACAGTGAGTTCTCTTTGCAAAGCAATATGAAAAGACATGTTGAGGAGATTCATGATGACAGTTCTACCTCTACTAGTGACAAAAGTCACAAACAACATACATGTCCAGAGATTGGCTGTGGAAAGGTTTTCAGATATGCATCACAGCTACAAAAACATGAAGATTCTCATGTTAAGTTGGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCGTGAAACATTTCGCTAATATTCAGTGCCTTCAAGCCCATGTGAAGTCCTCCCATCAATATATGACTTGTGACATTTGTGGGACTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGATCACATGAAGCTGAAGGCAGTTCCTCAGAGACCTTTCACTGTGAGTTTAAGGGTTGCAGCTGCACATTCTCTAGAAAATCTAATCTTGTTAAGCATAAGAAGGCTGTGCACTTTAAGGAAAAGCCTTTTGCGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGAGATAATCATGAAAAAACTGCTAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATCAAGAGTTCAGGTCAAGGCCGAGGGGAGGAAGGAAGAGAGAATGTCCTACTGTTGAAATGCTAATTAGGAAGAGGGTTACACCACCTAGTCAATTGGAGCATTGGTTATTTATGCAGGATAGTGAGTAG 1086 0.4319 MCEAVETEERPKFKDIRRYFCEYCGICRSKKALITSHINLHHKEEDEKARAERDPEAEASNSNTCEECGATFKKHAYLLQHMQSHSLERPFVCAVDDCQASYRRKDHLTRHLLQHEGKTFKCPVGNCNSEFSLQSNMKRHVEEIHDDSSTSTSDKSHKQHTCPEIGCGKVFRYASQLQKHEDSHVKLESVDVVCLEPGCVKHFANIQCLQAHVKSSHQYMTCDICGTKQLKKNIKRHLRSHEAEGSSSETFHCEFKGCSCTFSRKSNLVKHKKAVHFKEKPFACGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADQEFRSRPRGGRKRECPTVEMLIRKRVTPPSQLEHWLFMQDSE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01867 361 Gene3D Classic Zinc Finger 280 305 - -
Pumo9g01867 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 281 IPR013087 -
Pumo9g01867 361 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Pumo9g01867 361 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Pumo9g01867 361 SMART c2h2final6 120 145 IPR013087 -
Pumo9g01867 361 SMART c2h2final6 63 85 IPR013087 -
Pumo9g01867 361 SMART c2h2final6 192 217 IPR013087 -
Pumo9g01867 361 SMART c2h2final6 220 241 IPR013087 -
Pumo9g01867 361 SMART c2h2final6 251 276 IPR013087 -
Pumo9g01867 361 SMART c2h2final6 91 115 IPR013087 -
Pumo9g01867 361 SMART c2h2final6 19 41 IPR013087 -
Pumo9g01867 361 SMART c2h2final6 160 184 IPR013087 -
Pumo9g01867 361 SMART c2h2final6 282 308 IPR013087 -
Pumo9g01867 361 Gene3D Classic Zinc Finger 252 279 - -
Pumo9g01867 361 SUPERFAMILY beta-beta-alpha zinc fingers 233 290 IPR036236 -
Pumo9g01867 361 Gene3D Classic Zinc Finger 117 157 - -
Pumo9g01867 361 ProSitePatterns Zinc finger C2H2 type domain signature. 284 308 IPR013087 -
Pumo9g01867 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Pumo9g01867 361 MobiDBLite consensus disorder prediction 42 62 - -
Pumo9g01867 361 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Pumo9g01867 361 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Pumo9g01867 361 Gene3D Classic Zinc Finger 1 91 - -
Pumo9g01867 361 Gene3D Classic Zinc Finger 158 242 - -
Pumo9g01867 361 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Pumo9g01867 361 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Pumo9g01867 361 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Pumo9g01867 361 MobiDBLite consensus disorder prediction 42 60 - -
Pumo9g01867 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Pumo9g01867 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Pumo9g01867 361 PANTHER ZINC FINGER PROTEIN 7 350 - -
Pumo9g01867 361 SUPERFAMILY beta-beta-alpha zinc fingers 64 115 IPR036236 -
Pumo9g01867 361 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Pumo9g01867 361 Gene3D Classic Zinc Finger 92 116 - -
Pumo9g01867 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Pumo9g01867 361 SUPERFAMILY beta-beta-alpha zinc fingers 157 185 IPR036236 -
Pumo9g01867 361 ProSitePatterns Zinc finger C2H2 type domain signature. 253 276 IPR013087 -
Pumo9g01867 361 SUPERFAMILY beta-beta-alpha zinc fingers 118 146 IPR036236 -
Pumo9g01867 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01867 Pumo-Chr9 47822790 47824933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01867 87 311 C2H2 Transcription Factor Family AT1G72050 50.181 6.18e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo9g01867 zf-C2H2 0.0024 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01867 K09191 - gmx:100801812 709.523