Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01866 ATGAATGCTGAAAATCAACGTTTAAGAGAGTTGGTTGATCAGGTGAACAATAACTACAGTGCCCTACGCATGCAATTTATGAAGCTAACGCAGAAGCAGCATAACCATGGGAATAACGGAGTGATAGGGGAGAAAGAAGATATGGTTCCAAGGTCATTTTTAGACATGGGTGTTGCTGAGAAGGATGAGCCTAATTCCCAGCAATCTTCAGAAGGAAAACTGAGAGAAAGCAAAAGCATGGTTGAGTTGATGGATCAGTCCAAGGGACATGGCAAAGATATTGCTGGTTTGGAGGCAGAAAAGTTGGATTCTGGTGGAAGGGAAAGTGCAAAAGCTAGAAACGCTGACCAAGAACTCTCTAACAAAGTTCCTAGATTGGATCCAGCTTCTGAAACCATGTCAATGATCAAGAAAGCTCGTGTATCAGTTCGAGCAAGATCAGATTCGTCAATGATTGCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGTCCAAGAGCCTATTATCGTTGCACTATGAGTACTGGTTGTCCAGTAAGGAAACAAGTACAAAGGTGTGCTGAAGATCGAAGTGTGCTGATCACTACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAGCCCAGGCAATGGCATCAACCACATCTGCAGCAGCCTCAATGCTTCTTTCTGGATCAATGCCCAGCTCAGATGGCCTAATCAATCCAAGCATATTAGAAAGTGCTTCACTTCCTTGCTCTCAGAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCCACCATCACACTGGACCTCACTCAAAATGCTACCAATTCCTCACAGCTACAAAGGGAATTACCACAGGGCCAACTTGGCCTCCTATCCCCACTTTTGGCTCATAAGTTTATGTCAGTTCCAAAAATATTTGGACAGTCACTCTGTGATCAAACTAAGCTTGCTGGCTCACATGAGTCTCAGGGAATGGACACAACTTCATCATTTGCTAACACATTAAATGCAGCCACTGCTGCTATCACAGCAGACCCCAATTTCACTGCAGCTCTTGTGGCAGCTATAACATCTCTCATGGGGAGTTCACATTCAAACACCAATGGCACCAATAGTACAAGTGGAGATGAGCAGTGCAATAATAATGCATAA 1167 0.4482 MNAENQRLRELVDQVNNNYSALRMQFMKLTQKQHNHGNNGVIGEKEDMVPRSFLDMGVAEKDEPNSQQSSEGKLRESKSMVELMDQSKGHGKDIAGLEAEKLDSGGRESAKARNADQELSNKVPRLDPASETMSMIKKARVSVRARSDSSMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPSILESASLPCSQNMATLSASAPFPTITLDLTQNATNSSQLQRELPQGQLGLLSPLLAHKFMSVPKIFGQSLCDQTKLAGSHESQGMDTTSSFANTLNAATAAITADPNFTAALVAAITSLMGSSHSNTNGTNSTSGDEQCNNNA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01866 388 Gene3D WRKY domain 137 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g01866 388 MobiDBLite consensus disorder prediction 99 120 - -
Pumo9g01866 388 FunFam probable WRKY transcription factor 31 137 214 - -
Pumo9g01866 388 SUPERFAMILY WRKY DNA-binding domain 145 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g01866 388 Pfam WRKY DNA -binding domain 154 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01866 388 Coils Coil 5 32 - -
Pumo9g01866 388 MobiDBLite consensus disorder prediction 368 388 - -
Pumo9g01866 388 MobiDBLite consensus disorder prediction 99 123 - -
Pumo9g01866 388 SMART WRKY_cls 152 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01866 388 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 377 IPR044810 GO:0003700
Pumo9g01866 388 ProSiteProfiles WRKY domain profile. 147 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01866 Pumo-Chr9 47816153 47818650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01866 1 376 WRKY Transcription Factor Family AT1G62300 47.826 1.58e-101 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo9g01866 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01866 - - vum:124848283 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00989 1 15688294 15690713 Pumo9g01866 9 47816153 47818650 PCT