Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01859 ATGCGGAAAGGCAGAGGAGGAGGAGGAGCCACGGCGGTGGTAACGGCGGCGGCGAATGGATCCGTTTTAAAGGAGCCCCGGTACCGGGGCGTGAGGAAGAGACCGTGGGGGAGATTCGCGGCTGAGATCAGAGACCCCTTGAAGAAAGCGAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGAAGCTGCTCGAGCCTACGACGCCGCCGCTCGGACTCTCCGAGGTCCCAAAGCCAAAACAAACTTCCCTCTCTCACCTTTTTGCTATCAACACCCCACCACCGATCCTTTCTTCTACGCCGGTTTCCACGACCAACACCACCACCATCACAACAGCAACAACCTTAACAACCCTCAGAGACCAACTTCAAGTGGCATGAGTAGCACCGTTGAGTCCTTCAGTGGGCCCCGCCCTCCCACCACCACAACCACTACTACGACGCCGTTTTTGACCGCTACGCGGAGATACCCGCGCACTCCCCCTCTTGTCCCCGAAGACTGCCATAGTGACTGCGACTCTTCGTCTTCCGTCGTCGACGACGGCGACGACAACATCGTCTCCTCGTCGTTTCGACCTCCCTTGCCGTTCGATCTCAACGCGCTGCCGTTTGATGATGCTGCCGCGGATGATGATCTACGCTGCACCGCGCTTTGTCTCTGA 663 0.5852 MRKGRGGGGATAVVTAAANGSVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSPFCYQHPTTDPFFYAGFHDQHHHHHNSNNLNNPQRPTSSGMSSTVESFSGPRPPTTTTTTTTPFLTATRRYPRTPPLVPEDCHSDCDSSSSVVDDGDDNIVSSSFRPPLPFDLNALPFDDAAADDDLRCTALCL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01859 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 185 - -
Pumo9g01859 220 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Pumo9g01859 220 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Pumo9g01859 220 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Pumo9g01859 220 MobiDBLite consensus disorder prediction 113 147 - -
Pumo9g01859 220 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Pumo9g01859 220 MobiDBLite consensus disorder prediction 107 147 - -
Pumo9g01859 220 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Pumo9g01859 220 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Pumo9g01859 220 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Pumo9g01859 220 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Pumo9g01859 220 FunFam Ethylene-responsive transcription factor 2 27 85 - -
Pumo9g01859 220 MobiDBLite consensus disorder prediction 162 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01859 Pumo-Chr9 47744441 47746179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01859 1 220 AP2-EREBP Transcription Factor Family AT1G50640 58.824 2.44e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g01859 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01859 K09286 - gmx:100820249 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01859 9 47744441 47746179 Pumo9g01859 9 47744441 47746179 ECH