Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01854 ATGGGTTTGTTTCCATCAGATTTTGGTTGTATGATGCTGTTTATACTGATTCATCATAGTAAAATCTTTGTTTATGGGACCCTTAATTGCTTGATCAATGTTGCGGGAACAAATAGCACTGGACTAGGTTTTGTTACTGATCAAGGAAGAAATTCATCAGATGGTCCAAGCGGTTTGTATTTGAAGGAGGGACAAATAGCACTCGACCAAGTTTTGTTACAGATCAAGGAAGACATTCATCAGATGTCCAAGTGGGGACGTCACTACTTCAAAGATTGCTACATTGAAGGTGAAGTGGATTTTATCTTCGGTGATGGACAATCTTATTACGAGAATTGTTTGATCAATGCTGTGGGGACAAAATGGACCGTACCAGGTTATGTTACAGCTCAAGGACGAGAATCAGTAGATGGTCCAAGCGGTTTTATATTCCAAGGAGGTTCCCTTATTGGGGATGGAAAGGTGAACTTGGGAAGAGCGTGGCGAGCTAATTATTCCAGAGTCATATTTCAAGGGACATATTTTACTTCTGTGGTAACTCCTCAAGGATAG 552 0.4058 MGLFPSDFGCMMLFILIHHSKIFVYGTLNCLINVAGTNSTGLGFVTDQGRNSSDGPSGLYLKEGQIALDQVLLQIKEDIHQMSKWGRHYFKDCYIEGEVDFIFGDGQSYYENCLINAVGTKWTVPGYVTAQGRESVDGPSGFIFQGGSLIGDGKVNLGRAWRANYSRVIFQGTYFTSVVTPQG 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01854 183 Gene3D - 69 183 IPR012334 -
Pumo9g01854 183 Pfam Pectinesterase 87 183 IPR000070 GO:0030599|GO:0042545
Pumo9g01854 183 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 83 183 - -
Pumo9g01854 183 SUPERFAMILY Pectin lyase-like 84 182 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01854 Pumo-Chr9 47705859 47710087 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01854 86 183 Carbohydrate Esterase AT1G05310 50.485 1.23e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01854 - - gmx:100787453 159.844