Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01820 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACTGATGACGAACGCCTCAAAGAATATTTTGGGAAATACGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGGACAACAGGTCGTGCTCGCGGTTTCGGTTTTGTTGTCTTTGCTGATCCTTCTGCTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGATGATCAGCACACTATAAACAGACAGTCTGGTAGCATCCATGGATCTCCGAGTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAGAGTGACTTTAAGAAGTACTTTGATCAGTTTGGTACAATTACTGATGTTGTTGTAATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAGACATTTCATGAACTCAATGGGAAGATGGTGGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCCCCTGGACCAAGCCGAAGCCCATTGATAGGATATAACTATGGTTTGAATAGGACCAGTAGCTTCCTAAATAGTTATGCTCAGGGTTTCAATATGAATCCAATTGGAGGTTATGGAGTCAGGATGGATGGAAGGTTTAGTCCACTTACTACTGCTAGAAGTGGGTTTACCCCATTTGGCTCCAGTGGTTATGGAATGGGAGTGAATTTGGATTTAGGATTGAACCCAAGCTATGGAGGGACTTCCGGTTATGGTGGCAGTCTTGGATACGGTCGGATAAGTCCTTTCAACAATGGCAACTCTAACAGATATACCACTCCTATTGGCAATAGCGGGGGCAATGGGAGAAGTGATTCTCTTATGAACTCAGCTTCTCGAAGTGTTTGGGGAAATGGGAGCCTGAACAATGCTGCCAATAGTCCAGTCAGCCCTGGTGCTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATGGCGGCACCAATTGGGGTCAATCAGTTCCAACCCAGGGTGGAGGGGCAGCTTCTGGGTATAGTACTTGGGGTAACTCTTATGATGGTGGAGATAACAGCATTGGTTTAGGAGGTGGAGGATATGGAAGGAACAGCAGCCCAAGTGTGCCTCAATCCTCAACCTTTACCGCACCAACTGGTGATTATGAAGGATCCTACGGGGACTTGTACCGCAATGGTTCAGTTTACAGTGACTCAACTTGGCGGTCTGCTGCTTCTGAGATAGATGCTTCTGGTTCGTTTGGTTATGGTGGACTTGGTGGTATAGCTTCAGATGATCCAGTAAAGAGTTCTGAGGGCTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGTAAGATCTTTGGCGACATTCTTATCTCCTGA 1455 0.4509 MESDLGKLFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMDKHIIDGRTVEAKKAVPRDDQHTINRQSGSIHGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRTSSFLNSYAQGFNMNPIGGYGVRMDGRFSPLTTARSGFTPFGSSGYGMGVNLDLGLNPSYGGTSGYGGSLGYGRISPFNNGNSNRYTTPIGNSGGNGRSDSLMNSASRSVWGNGSLNNAANSPVSPGAYLGSGSGAFGVSIGNGGTNWGQSVPTQGGGAASGYSTWGNSYDGGDNSIGLGGGGYGRNSSPSVPQSSTFTAPTGDYEGSYGDLYRNGSVYSDSTWRSAASEIDASGSFGYGGLGGIASDDPVKSSEGFIGNYNVISRQTNRGKIFGDILIS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01820 484 Gene3D - 6 88 IPR012677 -
Pumo9g01820 484 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pumo9g01820 484 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pumo9g01820 484 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Pumo9g01820 484 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Pumo9g01820 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pumo9g01820 484 MobiDBLite consensus disorder prediction 80 105 - -
Pumo9g01820 484 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pumo9g01820 484 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pumo9g01820 484 CDD RRM2_Hrp1p 107 184 - -
Pumo9g01820 484 Gene3D - 105 185 IPR012677 -
Pumo9g01820 484 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pumo9g01820 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Pumo9g01820 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pumo9g01820 484 MobiDBLite consensus disorder prediction 287 310 - -
Pumo9g01820 484 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
Pumo9g01820 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01820 Pumo-Chr9 47319404 47323716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01820 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 5.19e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01820 K14411 - gmx:100788515 909.057