Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01812 ATGGCTGCTACCATATCTCTCTATCCTTATAATCCATTGCTATACTTTTCAACTCCCTCGAGTTTTCGTTCTCAATTTTGGATTTTGGAGAGAGGGCGTTTGAGTTCTGCAAGGTTAAAGAATTTGGTGAAACTTGCAGCGCATTCCAATCCGAGGATTCTCAAGACCAACAGGAAGTCAAAGTATGGAGAGGCACTGTCGCTGTATGATAGTGACGAAGACGATGAAGAAATGGATGATGACAACGACGACGACGATGATGATTGGCTTTCTGATGAGGAATTTGCTGAGCCTGCTGACTTAGATGTTAATAACAACAAGAGATTTAAGTCAAAGACAACTAAAGGAAAAGATAGACAAAAGGAACGGGAGTGGGGTTTGAGATCTTTTGACAATGAACAAAGCATTAGATTGCCTAGAAGTGAGAGAGTGGCATCCTTACAACGAAATGAGAGTGGAAAGCATAGTACAAATGTAAAGGATAAAAAATATCCATGGTTGTCCGAAGAGATTCCTTTGGATGTGAAATGGTTACCACTTCTTGATTACTTAAGCACTTTTGGAATGAAGGAATCACACTTTGTCCAAATGTATGAGAGACACATGCAATCACTTCAAATTAATGTGTCTTCCGCACAGGAAAGGTTAGAATACTTATTGAGTGTTGGTGTTAAACCTAGAGATGTAAGAAGAATCCTTTTGAGGCAGCCACAAATTCTTGAGTATACAGTGGAGAACAATTTGAAGTCTCGTATTGCTTTCTTGAGGGGCCTGGGCATACCTAATTCTAGAATAGGGCAAATCATTGCTTCTGCTCCATCCTTGCTTTCATATAGTGTTGAGAATTCGTTAAAGCCAACAGTTAGATATTTAATTGAGGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAGGTCATTCAGCTTAGTCCCCAAATTCTTGTGCAGAGAATTGACATTTCATGGAATACTCGTTATATGTTTCTTACCGAAGAGTTGGGTGCACCCAGAGATAGCATTGTGAAGATGGTGACAAAACATCCCCAACTTCTCCATTACAGCATAGATGATGGATTACTTCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATACAGATATCGTGAAAGTTTTGACAAGCCTTACACAGGTGCTATCTCTGTCCTTGGAGGAGAATCTAAAGCCCAAATATTTGTACTTGGTTAATGAACTTAACAATGAGGTGCAATCCTTGACCAAATACCCGATGTATCTTAGCTTATCTTTGGACCAGAGAATTCGTCCTCGTCATAGGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCACTTGGATCTTTAGTTCCAACTGATGAATGCTTTTGCCAACAGTGGGCTGGAACTAGTTTGGATACATATTTGGCATTTCGTCAGAGATTATTACTTAAAAAGTTTGCTGAGAAATATGAAAGAAAAATATGA 1470 0.3898 MAATISLYPYNPLLYFSTPSSFRSQFWILERGRLSSARLKNLVKLAAHSNPRILKTNRKSKYGEALSLYDSDEDDEEMDDDNDDDDDDWLSDEEFAEPADLDVNNNKRFKSKTTKGKDRQKEREWGLRSFDNEQSIRLPRSERVASLQRNESGKHSTNVKDKKYPWLSEEIPLDVKWLPLLDYLSTFGMKESHFVQMYERHMQSLQINVSSAQERLEYLLSVGVKPRDVRRILLRQPQILEYTVENNLKSRIAFLRGLGIPNSRIGQIIASAPSLLSYSVENSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRYMFLTEELGAPRDSIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNTDIVKVLTSLTQVLSLSLEENLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSLDTYLAFRQRLLLKKFAEKYERKI 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01812 489 Pfam mTERF 182 255 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 Pfam mTERF 244 436 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 SMART mt_12 409 440 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 SMART mt_12 303 335 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 SMART mt_12 376 408 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 SMART mt_12 340 371 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 SMART mt_12 195 225 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 SMART mt_12 266 298 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 Coils Coil 478 489 - -
Pumo9g01812 489 Gene3D Transcription termination factor 3, mitochondrial 240 476 IPR038538 -
Pumo9g01812 489 MobiDBLite consensus disorder prediction 69 99 - -
Pumo9g01812 489 FunFam Transcription termination factor MTERF9, chloroplastic 241 476 - -
Pumo9g01812 489 PANTHER CGI-12 PROTEIN-RELATED 263 383 IPR003690 GO:0003690|GO:0006355
Pumo9g01812 489 MobiDBLite consensus disorder prediction 100 126 - -
Pumo9g01812 489 MobiDBLite consensus disorder prediction 68 126 - -
Pumo9g01812 489 Coils Coil 195 215 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo9g01812 mTERF 3.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01812 K15032 - gmx:100809638 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01812 9 47265337 47267476 Pumo9g01812 9 47265337 47267476 ECH